CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07360	Canola	mitochondrion	82.1	85.07
CDY70786	Canola	cytosol, mitochondrion, nucleus	21.07	81.78
CDY33562	Canola	mitochondrion	81.55	77.89
CDX95968	Canola	mitochondrion	81.99	77.34
KRH45290	Soybean	cytosol, mitochondrion, nucleus	20.09	72.16
AT1G68990.2	Thale cress	mitochondrion	74.45	69.38
KRH07470	Soybean	cytosol, mitochondrion, nucleus	14.85	64.15
VIT_01s0010g00690.t01	Wine grape	mitochondrion	62.01	58.08
Solyc05g010660.2.1	Tomato	mitochondrion	61.57	56.8
GSMUA_Achr3P28120_001	Banana	mitochondrion	58.84	55.97
OQU90275	Sorghum	mitochondrion	59.28	55.64
Zm00001d022169_P001	Maize	mitochondrion	58.62	55.08
TraesCS5D01G171600.1	Wheat	plastid	59.72	54.48
TraesCS5B01G164300.1	Wheat	plastid	59.61	54.38
TraesCS5A01G167300.2	Wheat	plastid	57.1	53.64
KRH07469	Soybean	mitochondrion	46.94	53.62
CDX90977	Canola	plastid	58.84	53.37
KRH45285	Soybean	mitochondrion	40.07	53.19
CDX85538	Canola	plastid	58.52	53.07
Os09t0246200-01	Rice	mitochondrion	54.26	52.26
CDY26454	Canola	plastid	56.77	51.84
HORVU5Hr1G051530.5	Barley	mitochondrion	59.39	51.66
CDY34797	Canola	plastid	52.4	50.0
CDX76837	Canola	plastid	52.51	49.54
CDY39695	Canola	plastid	52.4	49.33
CDX69507	Canola	mitochondrion	23.58	49.2
CDY20283	Canola	plastid	52.4	49.18
CDY44514	Canola	cytosol	6.22	45.6

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078ETA2	EnsemblPlants:CDY04262	ProteinID:CDY04262	ProteinID:CDY04262.1
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00118002001	InterPro:IPR024075	InterPro:IPR037159
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0004EEA4A2	SEG:seg

Description

BnaC06g25530D

Coordinates

chrLK031950:-:746884..751561

Molecular Weight (calculated)

103530.0 Da

IEP (calculated)

9.072

GRAVY (calculated)

-0.406

Length

916 amino acids

Sequence
(BLAST)

001: MLRNILGRAT LRKIKPFSDS TPGNKIHSIL SSIHLLGSVQ NPFHELGRAP SVPYRGFATA AQAIKEDSSS GPEEVNELMT ETEKATLLAK KIVAGMGAQR
101: FHSLKQRQVK LETEEWERAA RECREIIEDM CEQKLAPNLP YVKSLFLGWF EPLRDAIQAD LDAFKVKRGK IPYAPYMEQL PADMMAVITM HKMMALLMTN
201: AEGVGVVRVV NAATNVGEAI EQEARINSFM QKDKKKKATS NTTESKDAVK LKKQINTLLK KQKVRRVSGI VKAHDSFKPW GQEAQVKVGA RLIQLLLETA
301: YIQPTAEQFD DGPPEIRPAF KQSSKNVTLE NTKLSRRYGC IECDPLIRKG LDKSARHMVI PYLPMLIPPR NWTGYEMFAS FLGCVAVMVY PGKIISYKYD
401: QGAHFFLPSY LMRTNGSNNN ALDTLGNTKW RINKKVLSLV DRIWANGGRL GGLVDRDDVP IPEEPDSEDQ EEVKQWKWKF KEANKENSER HSQRCDVELK
501: LEVARKMKEE EGGFYFPHNV DFRGRAYPMH PYLNHLGSDI CRGILEFCEG KPLGESGLRW LKIHIANLYA GGVDKFANED RVAFTESHLE DIFDSCDRPL
601: EGKRCPFPEA AISHIPIHQD GSCNGLQHYA ALGRDKTGAA AVNLFTGEKP ADIYADIAAR VLKIMQQDAE EDPETFPYAK LMLDQVDRKL VKQTVMTTVY
701: GVTYSGARNQ IKKRFKERGA FADDSQNFHA ACYAARVTTN ALEEMFGAAR AIMIWFGECA KLIASQNKAV CWTTPLGLPV VQPYRQPGRH LVKTTLQVLT
801: IKRDTEKVKA RKQMTAFAPN FVHSLDASHM MMTAVACNKA GLSFAGVHDS FWTRASDVDV MNRILREKFV ELYDKPVLEN LLESFQKSFP SLRFPPLPER
901: GDFDLREVIR SPYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.