CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 2
plastid 2
nucleus 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45290	Soybean	cytosol, mitochondrion, nucleus	69.81	58.04
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	31.6	52.34
CDY70786	Canola	cytosol, mitochondrion, nucleus	46.23	41.53
KRH72339	Soybean	cytosol, mitochondrion, nucleus	35.85	26.3
KRH63115	Soybean	mitochondrion	58.49	22.67
VIT_01s0010g00690.t01	Wine grape	mitochondrion	73.11	15.85
Solyc05g010660.2.1	Tomato	mitochondrion	73.11	15.61
OQU90275	Sorghum	mitochondrion	70.28	15.27
Zm00001d022169_P001	Maize	mitochondrion	69.81	15.18
GSMUA_Achr3P28120_001	Banana	mitochondrion	67.92	14.95
CDY04262	Canola	mitochondrion	64.15	14.85
CDY33562	Canola	mitochondrion	66.04	14.6
TraesCS5D01G171600.1	Wheat	plastid	68.87	14.54
TraesCS5B01G164300.1	Wheat	plastid	68.87	14.54
KRH01430	Soybean	plastid	71.7	14.53
CDX95968	Canola	mitochondrion	66.04	14.42
KRH45146	Soybean	mitochondrion	71.23	14.27
AT1G68990.2	Thale cress	mitochondrion	64.62	13.94
KRH03007	Soybean	plastid	62.26	13.88
HORVU5Hr1G051530.5	Barley	mitochondrion	68.87	13.87
CDY07360	Canola	mitochondrion	57.08	13.69
KRH63538	Soybean	cytosol, mitochondrion, nucleus	9.43	13.24
KRH54896	Soybean	plastid	60.38	13.16
TraesCS5A01G167300.2	Wheat	plastid	58.02	12.62
Os09t0246200-01	Rice	mitochondrion	41.98	9.36
KRH45285	Soybean	mitochondrion	8.49	2.61
KRH07469	Soybean	mitochondrion	9.43	2.49

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.1	Gene3D:3.30.70.370	EMBL:ACUP02010017	InterPro:DNA-dir_Rpol_phage-type
EnsemblPlantsGene:GLYMA_16G091500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0034245	UniProt:K7MG43	EnsemblPlants:KRH07470	ProteinID:KRH07470
ProteinID:KRH07470.1	PFAM:PF00940	PANTHER:PTHR10102	PANTHER:PTHR10102:SF0	SUPFAM:SSF56672	UniParc:UPI0002958101

Description

hypothetical protein

Coordinates

chr16:+:14247588..14251077

Molecular Weight (calculated)

24114.4 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.041

Length

212 amino acids

Sequence
(BLAST)

001: MDILEESGLL YGKLVDTPIN PSIKLFAKLG DIAKFQFKWQ LAYILTRSLG KLHVTGTVIA ATNQAVRWIT PLGLPVVQPY RQFGRHLIKT SLQILTLQRE
101: TNKVMVKRQR TAFPPNFVHS LDGSHMMMTA VACKKAGLNF AGVHDSYWTH ACDVDEMNRI LREKFVELYD APILENLLES FQKTFPALNF PPLPERGDFD
201: LQEVLGSAYF FN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.