Factsheet for GSMUA_Achr3P28120_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003507	Potato	cytosol	21.08	79.61
KRH45290	Soybean	cytosol, mitochondrion, nucleus	20.98	79.22
GSMUA_Achr1P09530_001	Banana	mitochondrion	5.92	77.03
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	54.21	73.42
CDY70786	Canola	cytosol, mitochondrion, nucleus	17.65	72.03
OQU90275	Sorghum	mitochondrion	70.92	69.98
VIT_01s0010g00690.t01	Wine grape	mitochondrion	70.41	69.33
Zm00001d022169_P001	Maize	mitochondrion	69.37	68.51
KRH07470	Soybean	cytosol, mitochondrion, nucleus	14.95	67.92
Solyc05g010660.2.1	Tomato	mitochondrion	68.43	66.36
TraesCS5D01G171600.1	Wheat	plastid	68.74	65.94
TraesCS5B01G164300.1	Wheat	plastid	68.74	65.94
TraesCS5A01G167300.2	Wheat	plastid	66.36	65.54
Os09t0246200-01	Rice	mitochondrion	63.97	64.77
Bra023533.1-P	Field mustard	mitochondrion	64.49	63.69
VIT_14s0083g00790.t01	Wine grape	cytosol	68.22	63.48
HORVU5Hr1G051530.5	Barley	mitochondrion	68.95	63.06
PGSC0003DMT400003501	Potato	cytosol	43.82	62.8
KRH07469	Soybean	mitochondrion	52.13	62.59
KRH45285	Soybean	mitochondrion	44.65	62.32
CDY33562	Canola	mitochondrion	61.99	62.25
Bra004354.1-P	Field mustard	mitochondrion	62.51	62.0
CDX95968	Canola	mitochondrion	62.31	61.79
KRH01430	Soybean	plastid	66.87	61.57
CDX85538	Canola	plastid	64.49	61.49
CDX90977	Canola	plastid	64.38	61.39
KRH45146	Soybean	mitochondrion	67.39	61.34
AT1G68990.2	Thale cress	mitochondrion	61.27	60.02
GSMUA_Achr1P09540_001	Banana	vacuole	14.43	59.91
CDY07360	Canola	mitochondrion	54.41	59.28
CDX69507	Canola	mitochondrion	27.0	59.23
Bra004010.1-P	Field mustard	plastid	55.35	59.09
CDY04262	Canola	mitochondrion	55.97	58.84
CDY26454	Canola	plastid	59.92	57.53
AT5G15700.2	Thale cress	plastid	61.79	56.61
GSMUA_Achr1P09560_001	Banana	mitochondrion, nucleus, plastid	7.17	56.1
Bra008681.1-P	Field mustard	plastid	28.14	55.19
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.85	51.56
GSMUA_Achr1P09550_001	Banana	mitochondrion	15.78	41.19
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	57.42	31.3
Solyc02g089330.2.1	Tomato	cytosol	9.97	30.57

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
EnsemblPlantsGene:GSMUA_Achr3G28120_001	EnsemblPlants:GSMUA_Achr3P28120_001	EnsemblPlants:GSMUA_Achr3T28120_001	InterPro:IPR024075	InterPro:IPR037159	UniProt:M0SIH8
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PFscan:PS51257	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI000295F4A0
SEG:seg	:	:	:	:	:

Description

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G28120_001]

Coordinates

chr3:+:27497583..27513349

Molecular Weight (calculated)

109554.0 Da

IEP (calculated)

9.367

GRAVY (calculated)

-0.405

Length

963 amino acids

Sequence
(BLAST)

001: MWRNIARTAS SASRNLRLSS NRPSPLPATT GFLSCFQDSI WCEKSRILDP ATPPLVTRLF DAGFWQKGES LPKTLGHVNS LIMEVSGVPR NSRSFASVAE
101: AVSSTDADED TSTIEEMQRL LDAEKYTMLR RRQIQIETEA WETAAKEYKE LLMDMCERKL APNLPYMKSL FLGWFEPFRD KIVAEQGQSM AKNKFSYQHY
201: FSQLPAEMVA VITMHKLVSL LMTGGESGGV RVVQAVCQVG EAIEQEARIH RFLEKTRKKT SKDQTSDEVE GGAVTKEEQI LRKKVTDLMK KQKVQQVRKI
301: VRGQDVSKPW GQDAQVKVGS RLIELFMETA FIQPPVSQSA DGPPDIRPAF RRVIRIVSSE QLKTKRYGII ECDPLVRQGL DRTARHMVIP YMPMLMPPLN
401: WKGYDRGAHL ILPSYIMRIH GARQQREALK RAPKKQMQAV FQALDTLGCT KWRVNKRVLS IVDRIWSSGG RLADLVDRED IPLPEKPDTE DESELRKWKW
501: KMRSVKKENS ERHSRRCDVE LKLAVARKMK DEEGFYYPHN LDFRGRAYPM HPYLNHLGSD LCRGILEFAE GRPLMKSGLR WLKIHLANLY AGGVDKLSYD
601: GRLAFTENHV EDIFDSADRP LEGRRWWLGA EDPFQCLAVC INLAEALRSS SPETTISHIP VHQDGSCNGL QHYAALGRDK LGAIAVNLVA GDKPADVYSG
701: IAARVLDIMR RDSQKDPAED PNALLARLIV DQVDRKLVKQ TVMTSVYGVT FIGAREQIKK RLKERGVTAD DRELFGASSY AARTTLTALE EMFEAARKIM
801: NWLGDCAKVI ATENHSVRWT TPLGLPVVQP YRALGKHIVK TSLQVLTLQR ETDKVMVRRQ RTAFPPNFVH SLDGSHMMMT AVACRKAGLI FAGVHDSYWT
901: HACDVDQMNR ILREKFVELY EKPILENLLE SFQIAFPTLT FPELPERGDF NLKDVLDSPY FFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.