Factsheet for VIT_14s0083g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003507	Potato	cytosol	21.16	85.88
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	54.69	79.61
VIT_01s0010g03200.t01	Wine grape	cytosol, nucleus, plastid	2.22	76.67
VIT_01s0010g03250.t01	Wine grape	cytosol	3.67	76.0
VIT_01s0010g00690.t01	Wine grape	mitochondrion	71.5	75.66
PGSC0003DMT400003501	Potato	cytosol	47.05	72.47
OQU90275	Sorghum	mitochondrion	65.8	69.77
Bra023533.1-P	Field mustard	mitochondrion	65.12	69.13
Zm00001d022169_P001	Maize	mitochondrion	64.35	68.31
GSMUA_Achr3P28120_001	Banana	mitochondrion	63.48	68.22
CDX85538	Canola	plastid	65.6	67.23
CDX90977	Canola	plastid	65.51	67.13
KRH01430	Soybean	plastid	67.25	66.54
Os09t0246200-01	Rice	mitochondrion	60.87	66.25
TraesCS5B01G164300.1	Wheat	plastid	64.15	66.14
TraesCS5D01G171600.1	Wheat	plastid	64.15	66.14
TraesCS5A01G167300.2	Wheat	plastid	62.13	65.95
KRH45146	Soybean	mitochondrion	66.86	65.41
AT5G15700.2	Thale cress	plastid	64.25	63.27
HORVU5Hr1G051530.5	Barley	mitochondrion	64.35	63.25
CDY26454	Canola	plastid	60.77	62.71
VIT_11s0037g00630.t01	Wine grape	plastid	56.81	60.06
CDX69507	Canola	mitochondrion	23.86	56.26
Bra008681.1-P	Field mustard	plastid	24.15	50.92
Solyc02g089330.2.1	Tomato	cytosol	14.98	49.36

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100266898	wikigene:100266898	MapMan:15.6.1.1	Gene3D:3.30.70.370	EMBL:AM437681	ProteinID:CAN71736
ProteinID:CAN71736.1	ProteinID:CBI16911	ProteinID:CBI16911.3	ncoils:Coil	UniProt:D7SML3	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	EMBL:FN594955	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075
InterPro:IPR037159	EntrezGene:LOC100266898	wikigene:LOC100266898	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311
SUPFAM:SSF56672	TIGR:TC64501	UniParc:UPI00015C8FD8	ArrayExpress:VIT_14s0083g00790	EnsemblPlantsGene:VIT_14s0083g00790	EnsemblPlants:VIT_14s0083g00790.t01
unigene:Vvi.3046	RefSeq:XP_002278535	RefSeq:XP_002278535.1	RefSeq:XP_010660553.1	SEG:seg	:

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:D7SML3]

Coordinates

chr14:-:22977589..22994438

Molecular Weight (calculated)

117541.0 Da

IEP (calculated)

9.552

GRAVY (calculated)

-0.418

Length

1035 amino acids

Sequence
(BLAST)

0001: MSSGKTPILS ANLGRDLDLI ISFEKPTNFR PNPLKKPTVM WRNIAKRAIP RAPRKCVYLD SQPLSRRYSF LGFSQDLIFP EIMKFGTFEP SSCSSSGFSE
0101: MGFRRIGEIS SREDAVGRPS FGCLRNQMGF SGFCPKSYAS VAEAVSSTDV EEDVSASDEI QELLGEMKKE EKRQVNFKRR EKLKMERGME QGRYLRLRRR
0201: QVKIETEAWE LAAKEYKELL MDMCEQKLAP NLPYMKSLFL GWFEPLRDAI VKEQELCRLG KNKAAYAPYF DQLPADMMSV ITMHKLVGLL MTGGEHGSTR
0301: VVQAACVIGD AIEQEVRIHN FLEKTKRKKV GKDKNVEGGG FDPVIHEQEK LRKKVTNLMK KQKLHAARQI VKGHDNSKPW GPEAKAKVGS RLIELLMQTA
0401: YIQPPVDNQL ADTPPDIRPA FVHTFKTVMR EAKKIGRRFG VIECDPLVKK GLERTARHMV IPYVPMLVPP LKWTGYDKGA HLFLPSYVMR THGARQQREA
0501: VKRAPRNQLE PVFEALNTLG NTKWRINKRL FDVVDRIWAG GGCLADLVDR NDVPLPEKPD TEDEAQLRKW KWKVKSVKKA NSERHSQRCD IELKLAVARK
0601: MKDEDGFFYP HNLDFRGRAY PMHPYLNHLG SDLCRGILEF AEGRPLGSSG LHWLKIHLAN LFAGGVDKLS HEGRITFTEN HLDDIFDSAD RPLEGKRWWL
0701: NAEDPFQFLA ACINLSEALR SSSPETTISH IPVHQDGSCN GLQHYAALGR DQLGATAVNL VAGEKPADVY SGIAARVLDI MKRDAEKDPA IFPDALRARI
0801: LINQVDRKLV KQTVMTSVYG VTYIGARDQI KRRLKERNAI ADDVELFGAA CYAAKITLTA LGEMFQAARS IMSWLGDCAK IIASENQPVR WTTPLGLPVV
0901: QPYRKLGRHL IKTSLQVLTL QRETETIMVK RQRTAFPPNF VHSLDGSHMM MTAIACKKAG LNFAGVHDSY WTHACDVDEM NRLLREKFVQ LYETPILENL
1001: LESFQQSFPA LEFPPLPERG DFDLREVLES PYFFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.