Factsheet for Solyc02g089330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003501	Potato	cytosol	63.69	29.76
VIT_14s0083g00790.t01	Wine grape	cytosol	49.36	14.98
Bra023533.1-P	Field mustard	mitochondrion	39.49	12.72
CDX90977	Canola	plastid	40.76	12.67
CDX85538	Canola	plastid	40.45	12.57
AT5G15700.2	Thale cress	plastid	39.17	11.7
Os09t0246200-01	Rice	mitochondrion	34.08	11.25
Solyc05g010660.2.1	Tomato	mitochondrion	35.03	11.08
CDY26454	Canola	plastid	35.35	11.07
TraesCS5A01G167300.2	Wheat	plastid	33.12	10.67
TraesCS5D01G171600.1	Wheat	plastid	32.8	10.26
TraesCS5B01G164300.1	Wheat	plastid	32.8	10.26
Zm00001d022169_P001	Maize	mitochondrion	31.53	10.15
OQU90275	Sorghum	mitochondrion	31.21	10.04
KRH01430	Soybean	plastid	33.44	10.04
GSMUA_Achr3P28120_001	Banana	mitochondrion	30.57	9.97
KRH45146	Soybean	mitochondrion	33.44	9.92
HORVU5Hr1G051530.5	Barley	mitochondrion	32.48	9.69
Solyc07g005930.2.1	Tomato	nucleus	22.29	7.06
CDX69507	Canola	mitochondrion	1.59	1.14
Bra008681.1-P	Field mustard	plastid	1.59	1.02
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	1.59	0.7
PGSC0003DMT400003507	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	MapMan:15.6.1.1	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0034245	InterPro:IPR037159	UniProt:K4BC85	PFAM:PF14700	PANTHER:PTHR10102	PANTHER:PTHR10102:SF4
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	EnsemblPlantsGene:Solyc02g089330.2	EnsemblPlants:Solyc02g089330.2.1
UniParc:UPI0002768A8B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:51184950..51186945

Molecular Weight (calculated)

36058.8 Da

IEP (calculated)

9.134

GRAVY (calculated)

-0.328

Length

314 amino acids

Sequence
(BLAST)

001: MSCTKTPISL TIRFDQFTDL ETNPYHISPI MWRNIVKQFS TRTPQKILLT SKNHAYSYLG FGLHSVFKDK RTLRSFIPVS CSNSGFLEMG FQNLGEFLPG
101: DEFLRRPLLC AMKSQVSNND ICRKNYASVA EAVAVSSTDA EEDVSVVGEV QELLTELKKE EKKQFTFRRR KQRMLTSGID RRKYPALMRR QVKIETQAWE
201: QAAKEYRELL FDMCEQKLAP NLPYVKSLFL GWFEPLRDKI AQEQELCIQG KSKAAYSKYF HLLPADMMAV ITMHKLMGLL MTGGEHGNVR VVQAALTIGD
301: AIEQEFQEMV GRNV

Best Arabidopsis Sequence Match ( AT5G15700.2 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.