CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90977	Canola	plastid	78.86	78.32
CDX85538	Canola	plastid	78.66	78.12
PGSC0003DMT400003507	Potato	cytosol	19.64	77.25
AT5G15700.2	Thale cress	plastid	74.98	71.55
CDY70786	Canola	cytosol, mitochondrion, nucleus	16.05	68.22
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	47.46	66.95
CDX69507	Canola	mitochondrion	28.41	64.92
VIT_14s0083g00790.t01	Wine grape	cytosol	62.71	60.77
OQU90275	Sorghum	mitochondrion	58.62	60.25
GSMUA_Achr3P28120_001	Banana	mitochondrion	57.53	59.92
Zm00001d022169_P001	Maize	mitochondrion	58.03	59.69
TraesCS5D01G171600.1	Wheat	plastid	58.52	58.47
TraesCS5B01G164300.1	Wheat	plastid	58.52	58.47
CDY33562	Canola	mitochondrion	55.53	58.08
PGSC0003DMT400003501	Potato	cytosol	38.88	58.04
TraesCS5A01G167300.2	Wheat	plastid	56.23	57.85
CDX95968	Canola	mitochondrion	55.93	57.78
Os09t0246200-01	Rice	mitochondrion	54.34	57.31
KRH01430	Soybean	plastid	59.42	56.98
CDY04262	Canola	mitochondrion	51.84	56.77
CDY07360	Canola	mitochondrion	49.15	55.77
HORVU5Hr1G051530.5	Barley	mitochondrion	58.42	55.65
KRH45146	Soybean	mitochondrion	58.33	55.29
CDY34797	Canola	plastid	50.95	53.23
CDX76837	Canola	plastid	50.95	52.63
CDY39695	Canola	plastid	50.65	52.21
CDY20283	Canola	plastid	50.65	52.05
CDY44514	Canola	cytosol	6.08	48.8
Solyc02g089330.2.1	Tomato	cytosol	11.07	35.35

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078GMK1	UniProt:A0A078GMK1	EnsemblPlants:CDY26454	ProteinID:CDY26454
ProteinID:CDY26454.1	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
EnsemblPlantsGene:GSBRNA2T00035253001	InterPro:IPR024075	InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311
SUPFAM:SSF56672	UniParc:UPI0004EE9F7C	SEG:seg	:	:	:

Description

BnaC09g42140DDNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078GMK1]

Coordinates

chrLK032190:-:244912..250218

Molecular Weight (calculated)

113846.0 Da

IEP (calculated)

8.410

GRAVY (calculated)

-0.435

Length

1003 amino acids

Sequence
(BLAST)

0001: MTSAQTQVLL ANQTKLFDQL IPLHKPLIPC GNPVSQPFPM WRNVAKQAVS RSQTIASSQA RSFLGFPQEP TILLSKNSIF RSISSSECRK LGFRCLRGIT
0101: KTEEFNGCFA RGYTSVAEEV LSTDVDEDPE VHELLKEMKR EDHRSWRMKN QEDVVGMGGS KYRNLWRRQV KIETEEWERA ANEYRELLAD MCEQRLAPNL
0201: PYVKSLFLGW FEPLRDVIGK EQELYRLGKS RAVYAHYIDQ LPADMVAVIT MHKLMGLLMT GGGDNGCVKV VHAACSVGDA IEQETRKKKE DGNEESGEVE
0301: NGTAVKEQDK LRKRVNDLIK KQKLSAVRKI LQSHDYTKPW TSDARAKVGS HLIEFLVRTA YIQSPANQQD HDLPDVRPAF KHTFKTVAQG SMKSGRKYGV
0401: IECDPLVRKG LEKTGRYAVI PYMPMLVPPL KWSGYDKGAY LFLASYIMKT HGAKQQRDAL KSAPKAQLKP VFEALDTLGS TRWRVNKRVL TVVDRIWSSG
0501: GCTADLVDRS DVPLPEKPDT EDENILKKWK WEMKSAKKEN SERHSQRCDV ELKLSVARKM KDEEGFYYPH NIDFRGRAYP MPQHLNHLGS DLCRGVLEFA
0601: DGRPLGSPGL RWLKIQLANL YAGGVDKLSY EGRLAFTENH LEDIFDSADR PLEGNRCPSP ETVLSYIPIH QDGSCNGFQH YAALGRDTVG AEAVNLVAGE
0701: KPADIYSEIA TRVLDIMRRD ADRDPETYPD ALRARKLINE VSLSEIRFII LNISVFSFLA CTVKQKSHEL FNVDRKLLKQ TVMTSVYGVT YIGARDQIKR
0801: RLKERSAFSD DNETFGAACY AAKVTSTAID EMFEAARAIM RWFGECAKII AAENETVRWT TPLGLPVVQP YLEMGKQLVK TSLQTLSLQR ETDNVVVRRQ
0901: RTAFPPNFIH SLDGCHMMMT ALACKRAGLC FAGVHDSFWT HACDVDKLNK ILREKFVELY SQPILENLLE SFEKSFPYLD FPPLPERGDL DLKLVLDSSY
1001: FFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.