CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044404_P001	Maize	mitochondrion	22.4	22.95
Zm00001d034215_P001	Maize	mitochondrion	22.4	16.09
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	23.2	15.59
Zm00001d030829_P001	Maize	mitochondrion	21.6	13.5
Zm00001d043127_P001	Maize	endoplasmic reticulum	33.6	13.21
Zm00001d021198_P001	Maize	cytosol	25.6	13.11
Zm00001d014049_P001	Maize	mitochondrion	20.8	12.75
Zm00001d023696_P001	Maize	plastid	23.2	11.46
KRH63115	Soybean	mitochondrion	45.6	10.42
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	14.4	9.78
CDY34797	Canola	plastid	65.6	8.54
CDY39695	Canola	plastid	66.4	8.53
CDY20283	Canola	plastid	66.4	8.5
CDX76837	Canola	plastid	65.6	8.44
TraesCS7B01G411000.1	Wheat	nucleus	47.2	7.67
Os06t0652000-01	Rice	plastid	48.0	7.44
Zm00001d035375_P002	Maize	mitochondrion, nucleus	7.2	7.26
KRH03007	Soybean	plastid	54.4	7.15
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	48.8	7.13
KRH54896	Soybean	plastid	54.4	6.99
CDY07360	Canola	mitochondrion	45.6	6.45
EER88745	Sorghum	plastid	48.8	6.36
CDY33562	Canola	mitochondrion	48.0	6.26
CDY04262	Canola	mitochondrion	45.6	6.22
TraesCS7A01G503900.1	Wheat	plastid	47.2	6.22
CDX95968	Canola	mitochondrion	48.0	6.18
Zm00001d046835_P002	Maize	plastid	48.8	6.16
CDY26454	Canola	plastid	48.8	6.08
CDX85538	Canola	plastid	48.0	5.94
CDX90977	Canola	plastid	47.2	5.84
CDX69507	Canola	mitochondrion	13.6	3.87
GSMUA_Achr1P09550_001	Banana	mitochondrion	8.0	2.71
KRH63538	Soybean	cytosol, mitochondrion, nucleus	2.4	1.99
Zm00001d007570_P001	Maize	cytosol	1.6	1.32
Zm00001d026323_P001	Maize	cytosol	1.6	1.32
CDY70786	Canola	cytosol, mitochondrion, nucleus	2.4	1.27
KRH72339	Soybean	cytosol, mitochondrion, nucleus	0.8	0.35
VIT_01s0010g03250.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:35.1	GO:A0A078I4T7	UniProt:A0A078I4T7	EnsemblPlants:CDY44514
ProteinID:CDY44514	ProteinID:CDY44514.1	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00080282001	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	SUPFAM:SSF56672	UniParc:UPI0004EE1BA8	:	:	:

Description

BnaC01g10350DBnaC01g10350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4T7]

Coordinates

chrLK032592:+:207405..208267

Molecular Weight (calculated)

14531.8 Da

IEP (calculated)

9.795

GRAVY (calculated)

-0.471

Length

125 amino acids

Sequence
(BLAST)

001: MAVIVMHKMM GLVMSGHGMG VGYTWEHQVE VSRKILDVVE RLWADGGNIA GLVNREDVSS HTRFLCLRIQ KRSNYGNGVL ERRKKINRER HSLRCDVELK
101: LSMARKMKDE EGFYYPHNLD FKDIP

Best Arabidopsis Sequence Match ( AT2G24120.2 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVKPICL FLCFH

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.