Factsheet for Os06t0652000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 15509842
plastid: 23257241

gfp PMID: 15509842 doi

K Kusumi, A Yara, N Mitsui, Y Tozawa, K Iba

Department of Biology, Faculty of Science, Kyushu University, Hakozaki, Higashi-ku, Fukuoka, 812-81 Japan.

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	20.6	89.25
Zm00001d030829_P001	Maize	mitochondrion	21.34	86.0
Zm00001d026323_P001	Maize	cytosol	16.0	84.87
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	89.7	84.56
Zm00001d007570_P001	Maize	cytosol	15.88	84.21
TraesCS7B01G411000.1	Wheat	nucleus	79.78	83.62
Zm00001d021198_P001	Maize	cytosol	24.69	81.56
TraesCS7A01G503900.1	Wheat	plastid	89.33	75.87
EER88745	Sorghum	plastid	90.2	75.81
Zm00001d046835_P002	Maize	plastid	90.69	73.76
PGSC0003DMT400028972	Potato	mitochondrion	42.31	72.4
Zm00001d023696_P001	Maize	plastid	22.58	71.94
Zm00001d014049_P001	Maize	mitochondrion	17.87	70.59
KRH63115	Soybean	mitochondrion	47.27	69.65
Zm00001d043127_P001	Maize	endoplasmic reticulum	26.92	68.24
Zm00001d034215_P001	Maize	mitochondrion	14.64	67.82
Zm00001d035375_P002	Maize	mitochondrion, nucleus	9.93	64.52
VIT_01s0010g03250.t01	Wine grape	cytosol	3.97	64.0
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	14.52	63.59
Zm00001d044404_P001	Maize	mitochondrion	9.43	62.3
KRH63538	Soybean	cytosol, mitochondrion, nucleus	11.04	58.94
VIT_11s0037g00630.t01	Wine grape	plastid	65.51	53.93
KRH03007	Soybean	plastid	61.66	52.26
CDY34797	Canola	plastid	62.16	52.19
Solyc07g005930.2.1	Tomato	nucleus	64.02	52.02
KRH72339	Soybean	cytosol, mitochondrion, nucleus	18.61	51.9
CDY39695	Canola	plastid	62.66	51.9
CDX76837	Canola	plastid	62.28	51.7
CDY20283	Canola	plastid	62.53	51.64
Bra039230.1-P	Field mustard	plastid	62.16	51.17
KRH54896	Soybean	plastid	61.54	50.98
Bra032120.1-P	Field mustard	plastid	59.43	50.96
AT2G24120.1	Thale cress	plastid	62.41	50.65
CDY44514	Canola	cytosol	7.44	48.0
Os09t0246200-01	Rice	mitochondrion	55.34	46.9
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	67.99	31.01

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	ProteinID:BAD38123.1	ProteinID:BAF20145.2	ProteinID:BAS98910.1	ProteinID:BAS98911.1
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0034245	InterPro:IPR024075	InterPro:IPR037159	EnsemblPlantsGene:Os06g0652000	EnsemblPlants:Os06t0652000-01	PFAM:PF00940
PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	UniProt:Q67UP6
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI000042649B	SEG:seg

Description

RNA POLYMERASESimilar to T3/T7-like RNA polymerase (Fragment). (Os06t0652000-01);Similar to DNA-directed RNA polymerase. (Os06t0652000-02)

Coordinates

chr6:+:26680169..26690049

Molecular Weight (calculated)

91427.5 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.373

Length

806 amino acids

Sequence
(BLAST)

001: MLDRRLAPAL PYVKSLFLGW FEPLRDAIAR DQEVQRRKRV KHVYAKYLLL LPADKVAVIV MHKMMGLLMS SKDGVASVRV VQAAHCIGEA VEREFKVQTF
101: FQKTRKKSAG ENDLALEKEQ AKCRKRVKSL VRRRKLTEAQ KIVQQEIELE EWGTESQVKL GTRLIELLLD SAFVQSPADQ TPESSPDIRP AFKHVLRQPI
201: VENGRLKKKH WVIECDPLVH EGFESTARHV EIPYLPMLVT PKKWKGYDTG GYLFLPSYIM RTHGVKDQKE AIKSVPRKQL RKVFEALDTL GSTKWRVNRR
301: VHNAVETIWS RGGGIAGLVD KENIPLPERP ETEDPDEIQK WKWSLKKAKK ANRELHAERC DTELKLSVAR KMREEDGFYY PHNLDFRGRA YPMHAHLSHL
401: GSDLCRGVLE YAEGRPLGKS GLRWLKIHLA NKYGGGIEKL SHEDKVAFVE NQLPDIFDSA TNPVDGNCWW MNAEDPFQCL AACMDLSDAL KSSSPQCAVS
501: HLPIHQDGSC NGLQHYAALG RDYMGAAAVN LVPGDKPADI YSEIAARVLD VVREDSMEDP ATNPTASLAR VLVDQVDRKL VKQTVMTSVY GVTYIGARQQ
601: ITKRLQEKGL ITDDKLLYEV SCYATRVTLD ALGQMFQSAR GIMAWLGDCA KMIASENHPV KWTSPVGLPV VQPYKKYKNY MIRTSLQCLA LRREGDAIAL
701: QRQKAAFPPN FVHSLDSSHM MMTAIACKKA GLHFAGVHDS FWVHACDVDK MNQILREQFV ELYSMPILEN LLKEFQTSFP TLEFPPCPSQ GDFDVREVLA
801: STYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.