Factsheet for Zm00001d030829_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	74.0	79.57
Zm00001d023696_P001	Maize	plastid	91.0	71.94
Zm00001d014049_P001	Maize	mitochondrion	65.5	64.22
Zm00001d035375_P002	Maize	mitochondrion, nucleus	38.5	62.1
VIT_01s0010g03250.t01	Wine grape	cytosol	14.5	58.0
Zm00001d034215_P001	Maize	mitochondrion	50.0	57.47
Zm00001d043127_P001	Maize	endoplasmic reticulum	89.0	55.97
Zm00001d044404_P001	Maize	mitochondrion	26.5	43.44
Zm00001d021198_P001	Maize	cytosol	32.5	26.64
KRH63115	Soybean	mitochondrion	71.0	25.96
PGSC0003DMT400028972	Potato	mitochondrion	58.0	24.63
TraesCS7B01G411000.1	Wheat	nucleus	87.0	22.63
CDY44514	Canola	cytosol	13.5	21.6
Os06t0652000-01	Rice	plastid	86.0	21.34
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	86.0	20.12
EER88745	Sorghum	plastid	90.5	18.87
Zm00001d046835_P002	Maize	plastid	93.5	18.87
TraesCS7A01G503900.1	Wheat	plastid	87.5	18.44
CDY34797	Canola	plastid	71.5	14.9
CDX76837	Canola	plastid	72.0	14.83
KRH54896	Soybean	plastid	72.0	14.8
KRH03007	Soybean	plastid	70.0	14.72
VIT_11s0037g00630.t01	Wine grape	plastid	71.5	14.61
Bra039230.1-P	Field mustard	plastid	71.5	14.61
CDY39695	Canola	plastid	71.0	14.59
CDY20283	Canola	plastid	70.5	14.45
AT2G24120.1	Thale cress	plastid	71.5	14.4
Solyc07g005930.2.1	Tomato	nucleus	69.5	14.01
Zm00001d022169_P001	Maize	mitochondrion	67.5	13.85
Bra032120.1-P	Field mustard	plastid	63.0	13.4
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	11.5	12.5
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	72.5	8.21
KRH63538	Soybean	cytosol, mitochondrion, nucleus	1.5	1.99
KRH72339	Soybean	cytosol, mitochondrion, nucleus	2.5	1.73
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d007570_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:A0A1D6KEL6
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	ProteinID:ONM01588.1	PFAM:PF00940	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	SUPFAM:SSF56672	UniParc:UPI000845567B	EnsemblPlantsGene:Zm00001d030829	EnsemblPlants:Zm00001d030829_P001	EnsemblPlants:Zm00001d030829_T001

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr1:+:162069077..162071012

Molecular Weight (calculated)

22285.4 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.307

Length

200 amino acids

Sequence
(BLAST)

001: MVHAYLQLID ILGSTKWRLN RRVHDVVDTI WSQGGGIAGL VDKANVARKM REEDGFYYPH NLDFRGRAYP MHPHLSHLGS DLCQGVLEYA EGRPLGKCGL
101: CWLKIHLANK YGGGIEKLSH EGKLAFVENQ LFDIFDSAAN PVDGNCWWTN AEDPFQCLAA CMDLSDALRS PSPYHAVSHL PIHQDGSCNG LQHYAALGRD

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.