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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34797 Canola plastid 87.31 90.31
CDX76837 Canola plastid 87.51 89.5
Bra039230.1-P Field mustard plastid 87.71 88.97
CDY39695 Canola plastid 86.91 88.69
Bra032120.1-P Field mustard plastid 83.89 88.62
CDY20283 Canola plastid 86.51 88.01
PGSC0003DMT400028972 Potato mitochondrion 38.37 80.89
KRH63115 Soybean mitochondrion 41.39 75.14
Zm00001d045595_P001 Maize cytosol, mitochondrion, nucleus 13.8 73.66
Zm00001d030829_P001 Maize mitochondrion 14.4 71.5
KRH63538 Soybean cytosol, mitochondrion, nucleus 10.17 66.89
VIT_11s0037g00630.t01 Wine grape plastid 63.44 64.35
Os06t0652000-01 Rice plastid 50.65 62.41
KRH03007 Soybean plastid 59.11 61.72
Solyc07g005930.2.1 Tomato nucleus 60.93 60.99
VIT_01s0010g03250.t01 Wine grape cytosol 3.02 60.0
Zm00001d014049_P001 Maize mitochondrion 12.29 59.8
Zm00001d023696_P001 Maize plastid 15.21 59.68
HORVU7Hr1G112980.9 Barley mitochondrion, nucleus, plastid 50.96 59.18
KRH72339 Soybean cytosol, mitochondrion, nucleus 17.22 59.17
KRH54896 Soybean plastid 57.4 58.58
TraesCS7B01G411000.1 Wheat nucleus 45.12 58.26
Zm00001d034215_P001 Maize mitochondrion 10.17 58.05
Zm00001d021198_P001 Maize cytosol 14.0 56.97
Zm00001d043127_P001 Maize endoplasmic reticulum 18.03 56.29
Zm00001d044404_P001 Maize mitochondrion 6.85 55.74
EER88745 Sorghum plastid 53.47 55.37
TraesCS7A01G503900.1 Wheat plastid 52.47 54.9
AT1G68990.2 Thale cress mitochondrion 53.78 54.32
Zm00001d046835_P002 Maize plastid 53.27 53.38
Zm00001d035375_P002 Maize mitochondrion, nucleus 6.55 52.42
AT5G15700.2 Thale cress plastid 53.68 50.71
Zm00001d026323_P001 Maize cytosol 7.55 49.34
Zm00001d007570_P001 Maize cytosol 7.45 48.68
Zm00001d043100_P001 Maize endoplasmic reticulum, extracellular 7.05 38.04
GSMUA_Achr1P09550_001 Banana mitochondrion 14.1 37.94
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.10.1320.10Gene3D:1.10.150.20Gene3D:1.10.287.260Gene3D:1.10.287.280
MapMan:15.6.1.1Gene3D:3.30.70.370EntrezGene:816946ProteinID:AAD03373.1ProteinID:AEC07531.1EMBL:AK229652
ArrayExpress:AT2G24120EnsemblPlantsGene:AT2G24120RefSeq:AT2G24120TAIR:AT2G24120RefSeq:AT2G24120-TAIR-GEnsemblPlants:AT2G24120.1
TAIR:AT2G24120.1ProteinID:CAA69972.1ncoils:CoilInterPro:DNA-dir_RNA_pol_helix_hairp_sfInterPro:DNA-dir_Rpol_phage-typeGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139
GO:GO:0006351GO:GO:0006390GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0016740GO:GO:0016779GO:GO:0034245InterPro:IPR024075
InterPro:IPR037159RefSeq:NP_179989.1UniProt:O24600Symbol:PDE319PFAM:PF00940PFAM:PF14700
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007057PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
ScanProsite:PS00489ScanProsite:PS00900PANTHER:PTHR10102PANTHER:PTHR10102:SF1InterPro:RNA_POL_N_sfInterPro:RPOL_N
SMART:SM01311SUPFAM:SSF56672UniParc:UPI00001347ECEMBL:Y08463SEG:seg:
Description
RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
Coordinates
chr2:-:10248851..10254641
Molecular Weight (calculated)
112630.0 Da
IEP (calculated)
9.697
GRAVY (calculated)
-0.421
Length
993 amino acids
Sequence
(BLAST)
001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.