Factsheet for Zm00001d021198_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026323_P001	Maize	cytosol	44.26	71.05
Zm00001d007570_P001	Maize	cytosol	43.85	70.39
Zm00001d044404_P001	Maize	mitochondrion	29.92	59.84
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	37.7	49.46
Zm00001d034215_P001	Maize	mitochondrion	34.84	48.85
Zm00001d014049_P001	Maize	mitochondrion	35.66	42.65
Zm00001d030829_P001	Maize	mitochondrion	26.64	32.5
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	22.95	30.43
Zm00001d043127_P001	Maize	endoplasmic reticulum	38.11	29.25
Zm00001d023696_P001	Maize	plastid	27.46	26.48
CDY44514	Canola	cytosol	13.11	25.6
Os06t0652000-01	Rice	plastid	81.56	24.69
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	80.33	22.92
EER88745	Sorghum	plastid	87.7	22.31
Zm00001d046835_P002	Maize	plastid	89.34	22.0
Zm00001d035375_P002	Maize	mitochondrion, nucleus	11.07	21.77
TraesCS7B01G411000.1	Wheat	nucleus	66.8	21.2
TraesCS7A01G503900.1	Wheat	plastid	81.56	20.97
KRH63115	Soybean	mitochondrion	38.93	17.37
PGSC0003DMT400028972	Potato	mitochondrion	30.33	15.71
VIT_11s0037g00630.t01	Wine grape	plastid	59.84	14.91
Bra032120.1-P	Field mustard	plastid	57.38	14.89
CDY34797	Canola	plastid	57.79	14.69
KRH03007	Soybean	plastid	56.97	14.62
CDX76837	Canola	plastid	57.79	14.52
Solyc07g005930.2.1	Tomato	nucleus	59.02	14.52
Bra039230.1-P	Field mustard	plastid	57.79	14.4
KRH54896	Soybean	plastid	57.38	14.39
CDY39695	Canola	plastid	57.38	14.39
CDY20283	Canola	plastid	56.97	14.24
AT2G24120.1	Thale cress	plastid	56.97	14.0
Zm00001d022169_P001	Maize	mitochondrion	54.92	13.74
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	62.3	8.6
KRH63538	Soybean	cytosol, mitochondrion, nucleus	1.23	1.99
KRH72339	Soybean	cytosol, mitochondrion, nucleus	0.82	0.69
VIT_01s0010g03250.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.1	UniProt:A0A1D6I8X5	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
ProteinID:ONM56489.1	PFAM:PF14700	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RPOL_N	SUPFAM:SSF56672
UniParc:UPI000845A069	EnsemblPlantsGene:Zm00001d021198	EnsemblPlants:Zm00001d021198_P001	EnsemblPlants:Zm00001d021198_T001	SEG:seg	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr7:-:145692329..145694521

Molecular Weight (calculated)

28268.1 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.618

Length

244 amino acids

Sequence
(BLAST)

001: MSEAQRLVQQ ELELEEWGTE AQVKLGSRLI ELLLDSAFVQ PPADQTPDSS PDIRPAFKHV LRQPIIENGL GMLIYPTSLC WYLRRNEKGI YDKGGHLFLP
101: SYIMRTHGVK DQKDAINSVP RKQLQKVFEI PLPERLESED PDEMQKWKWS LKKAKKTNRE LHAERCDTEL KLSVARKVRE EDRFYYPHNL DFRGCAYLMH
201: PHLSHLGSDL CRGVLEYAEG RPLGKYGLCW LKIHLANKYG GGIE

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.