Factsheet for VIT_11s0037g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028972	Potato	mitochondrion	40.86	84.93
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	13.69	72.04
Zm00001d030829_P001	Maize	mitochondrion	14.61	71.5
VIT_01s0010g03250.t01	Wine grape	cytosol	3.58	70.0
VIT_01s0010g03200.t01	Wine grape	cytosol, nucleus, plastid	2.15	70.0
Solyc07g005930.2.1	Tomato	nucleus	68.03	67.14
Os06t0652000-01	Rice	plastid	53.93	65.51
Bra032120.1-P	Field mustard	plastid	62.0	64.57
Bra039230.1-P	Field mustard	plastid	64.45	64.45
AT2G24120.1	Thale cress	plastid	64.35	63.44
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	54.85	62.81
TraesCS7B01G411000.1	Wheat	nucleus	49.23	62.68
Zm00001d014049_P001	Maize	mitochondrion	12.56	60.29
Zm00001d021198_P001	Maize	cytosol	14.91	59.84
VIT_01s0010g00690.t01	Wine grape	mitochondrion	59.65	59.71
Zm00001d023696_P001	Maize	plastid	15.32	59.29
Zm00001d034215_P001	Maize	mitochondrion	10.32	58.05
TraesCS7A01G503900.1	Wheat	plastid	55.57	57.32
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.49	56.92
VIT_14s0083g00790.t01	Wine grape	cytosol	60.06	56.81
Zm00001d044404_P001	Maize	mitochondrion	7.05	56.56
EER88745	Sorghum	plastid	55.26	56.41
Zm00001d046835_P002	Maize	plastid	55.46	54.79
Zm00001d026323_P001	Maize	cytosol	8.48	54.61
Zm00001d007570_P001	Maize	cytosol	8.48	54.61
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.54	51.61
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	7.15	38.04

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100250202	wikigene:100250202	MapMan:15.6.1.1	Gene3D:3.30.70.370	ProteinID:CCB59777	ProteinID:CCB59777.1
ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	UniProt:F6HYL3	EMBL:FN596499	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075	InterPro:IPR037159	EntrezGene:LOC100250202	wikigene:LOC100250202
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI00015C9924	ArrayExpress:VIT_11s0037g00630
EnsemblPlantsGene:VIT_11s0037g00630	EnsemblPlants:VIT_11s0037g00630.t01	RefSeq:XP_002274521	RefSeq:XP_002274521.1	SEG:seg	:

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F6HYL3]

Coordinates

chr11:+:8646478..8697504

Molecular Weight (calculated)

111666.0 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.448

Length

979 amino acids

Sequence
(BLAST)

001: MASTAVFLPI PHAKIQKPKK LDHHKPHRTL PVLFTSNPSP HFHTSTISKN SLSSSSFRHN FHSPSHSSNS EAQCHALPLS PTNNSIETLQ DSSNIQVKES
101: IPRIFVQDPP WISSFLFHDW CERNRRTGQN VKLEFRETER RNYGLLRRRQ VKAETEAWER MVEEYREIER EMCEKKLAPN LPYVKALFLG WFEPLREAID
201: KEQRAQRTKK QKAAYAPHIE LLPADKMAVI VMHKMMGLVM MGHEEGCVRV VQAAVQIGMA IEQEVRIHSF LEKTKNFERH KTVGHSQEGL REKEILRKRV
301: KSFIRKKKII EVQKLVKNEE ITPWGRDTQA KLGSRLIELL TETAYVQTPV NQSADCPPDV RPAFRHTFKT VTKESGQKDW RKYGVIECDP LVLIGLDRTA
401: KHMVIPYVPM LIPPKKWKGY DKGGYLFLPS YVMRTHGSRK QQDAVKSVPR RQLQKVFEAL DTLGNTKWRI NRRVLSVVES IWARGGNLGG LVDRENVPLP
501: EKPSTEDLTE IQNWKWNARK AKKINQERHS LRCDTEIKLS VARKMKDEEG FYYPHNLDFR GRAYPMHPHL NHLSSDLCRG VLEFAEGRPL GKSGLRWLKI
601: QLANLYAGGV EKLSYDGRLA FVDNHLDDVF DSADNPLNGN RWWLTAEDPF QCLAACINLS EALRSSSPHT VISHLPIHQD GSCNGLQHYA ALGRNSLEAS
701: AVNLVAGEKP ADVYSEIAAR VHEIMKRDSN KDPATDPKAL LAKVLIGQVD RKLVKQTVMT SVYGVTYIGA REQIKRRLAE KGLITDERLL FTAACYAAKV
801: TLAALGEIFQ AARDIMAWLG ECAKVIASEN QPVQWTTPLG LPVIQPYCKS ERHLIRTSLQ VLALQREGSV VVIRKQRTAF PPNFVHSLDG SHMMMTAVAC
901: RDAGLCFAGV HDSFWTHACD VDKMNQILRE KFVELYSMPI LENLLESFQT SHPTLTFPPL PDRGNFDLRE VLESPYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.