Factsheet for Zm00001d043100_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007570_P001	Maize	cytosol	38.04	46.05
Zm00001d026323_P001	Maize	cytosol	37.5	45.39
Zm00001d021198_P001	Maize	cytosol	30.43	22.95
Os06t0652000-01	Rice	plastid	63.59	14.52
CDY44514	Canola	cytosol	9.78	14.4
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	63.04	13.57
Zm00001d046835_P002	Maize	plastid	71.2	13.22
TraesCS7A01G503900.1	Wheat	plastid	64.67	12.54
Zm00001d030829_P001	Maize	mitochondrion	12.5	11.5
TraesCS7B01G411000.1	Wheat	nucleus	47.28	11.31
Zm00001d023696_P001	Maize	plastid	13.04	9.49
Zm00001d043127_P001	Maize	endoplasmic reticulum	15.22	8.81
Bra032120.1-P	Field mustard	plastid	38.59	7.55
CDY34797	Canola	plastid	38.59	7.4
CDX76837	Canola	plastid	38.59	7.31
CDY39695	Canola	plastid	38.59	7.3
CDY20283	Canola	plastid	38.59	7.27
Bra039230.1-P	Field mustard	plastid	38.59	7.25
VIT_11s0037g00630.t01	Wine grape	plastid	38.04	7.15
KRH54896	Soybean	plastid	37.5	7.09
AT2G24120.1	Thale cress	plastid	38.04	7.05
Solyc07g005930.2.1	Tomato	nucleus	37.5	6.96
KRH03007	Soybean	plastid	35.33	6.83
Zm00001d022169_P001	Maize	mitochondrion	34.24	6.46
KRH63115	Soybean	mitochondrion	14.13	4.75
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	45.11	4.7
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	3.8	3.76
Zm00001d044404_P001	Maize	mitochondrion	1.63	2.46
Zm00001d034215_P001	Maize	mitochondrion	1.63	1.72
Zm00001d035375_P002	Maize	mitochondrion, nucleus	1.09	1.61
Zm00001d014049_P001	Maize	mitochondrion	1.63	1.47
KRH63538	Soybean	cytosol, mitochondrion, nucleus	0.54	0.66
PGSC0003DMT400028972	Potato	mitochondrion	1.63	0.64
VIT_01s0010g03250.t01	Wine grape	cytosol	0.0	0.0
KRH72339	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.260	MapMan:35.1	UniProt:A0A1D6N8Y0	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR024075	ProteinID:ONM37001.1	PFAM:PF14700	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RPOL_N	SUPFAM:SSF56672	UniParc:UPI0008424EE8	EnsemblPlantsGene:Zm00001d043100	EnsemblPlants:Zm00001d043100_P001
EnsemblPlants:Zm00001d043100_T001	:	:	:	:	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr3:+:189194641..189196878

Molecular Weight (calculated)

20814.1 Da

IEP (calculated)

7.882

GRAVY (calculated)

-0.370

Length

184 amino acids

Sequence
(BLAST)

001: MFEMFNVPGL YIAVQPILAL AAGYTTTKVS HRSLALHFCI GIGGTVSHRE YQIELLLNSA FVQPPADQTP DSSPPAFKHV LRQPIIENGR LKKKHWVIDH
101: LVHEGFESTA RHVDIPYLPM LVPLKKWKGV NRRVHDVVET IWSQGGGIAG LVDKANIPLP ERPESEDPDE MQKWKYQHKE GKEN

Best Arabidopsis Sequence Match ( AT2G24120.2 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVKPICL FLCFH

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.