CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63115	Soybean	mitochondrion	54.78	97.44
PGSC0003DMT400028972	Potato	mitochondrion	39.57	81.74
KRH45290	Soybean	cytosol, mitochondrion, nucleus	18.91	72.16
Zm00001d030829_P001	Maize	mitochondrion	14.8	72.0
KRH63538	Soybean	cytosol, mitochondrion, nucleus	11.1	71.52
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	13.67	71.51
KRH03007	Soybean	plastid	69.78	71.4
KRH72339	Soybean	cytosol, mitochondrion, nucleus	19.73	66.44
Solyc07g005930.2.1	Tomato	nucleus	62.9	61.69
Os06t0652000-01	Rice	plastid	50.98	61.54
Zm00001d023696_P001	Maize	plastid	15.72	60.47
KRH07470	Soybean	cytosol, mitochondrion, nucleus	13.16	60.38
TraesCS7B01G411000.1	Wheat	nucleus	47.69	60.34
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	51.59	58.71
Zm00001d014049_P001	Maize	mitochondrion	12.13	57.84
AT2G24120.1	Thale cress	plastid	58.58	57.4
Zm00001d021198_P001	Maize	cytosol	14.39	57.38
Bra039230.1-P	Field mustard	plastid	57.55	57.2
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.5	56.6
Bra032120.1-P	Field mustard	plastid	54.68	56.6
Zm00001d034215_P001	Maize	mitochondrion	9.87	55.17
CDY44514	Canola	cytosol	6.99	54.4
TraesCS7A01G503900.1	Wheat	plastid	52.93	54.27
Zm00001d044404_P001	Maize	mitochondrion	6.78	54.1
EER88745	Sorghum	plastid	52.42	53.18
Zm00001d046835_P002	Maize	plastid	52.83	51.87
KRH07469	Soybean	mitochondrion	42.45	51.5
Zm00001d026323_P001	Maize	cytosol	8.02	51.32
KRH01430	Soybean	plastid	54.98	51.15
Zm00001d007570_P001	Maize	cytosol	7.91	50.66
KRH45146	Soybean	mitochondrion	54.16	49.81
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.27	49.19
KRH45285	Soybean	mitochondrion	34.64	48.84
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	7.09	37.5
GSMUA_Achr1P09550_001	Banana	mitochondrion	13.77	36.31

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100783185	MapMan:15.6.1.1	Gene3D:3.30.70.370	EMBL:ACUP02003593	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	EnsemblPlantsGene:GLYMA_06G217400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075
InterPro:IPR037159	UniProt:K7KWI1	EnsemblPlants:KRH54896	ProteinID:KRH54896	ProteinID:KRH54896.1	PFAM:PF00940
PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf
InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002339CD4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:22911506..22941162

Molecular Weight (calculated)

110641.0 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.397

Length

973 amino acids

Sequence
(BLAST)

001: MTLASSFPTP QVHAFDNPAR RRRRSHFHII NRNKPHRTLH FLLIPTSPSP SSSLLFSCSS FPLTHSDPIL QFRHHHLLST DGNFIVEDLS AAVEEDVSPA
101: TTARIFVQEP PWLFLKGLLM QEEEMRQKDK EREKYNLLRR RQIEAETEAW EKMVEEYREL EREMREKMLA PNLPHVKSLL LGWFEPFRAA VEAEQTAHRA
201: RPKKQQDSIA PHVDDLPADK VAVIVMHKMM AMVMENEEGC VQLVHAAVHI GMALEQEVRI HKFVEGNKSS QSKKTEGDAE DSLDSDKEKQ RNYLNSLLKK
301: NRLREVQMIL RKEECSPWSR DTQAKLGSRL VELLIDTAYV HSPVNQSADT PPDIRPAFRH GFKAVPWHPG QKFSKKYGII QCDPLVLVGL EKCAKHMLIP
401: YMPMLIPPKK WKGYDKGGHL FLPSYIMRTH GSKKQQDVMK NVDGAQMQKV FEALDILGNT KWRVNRRVLG VVESIWAGGG NIAGLVDCKD VPKPDKPLVE
501: DLKLIQEWKC NVRKAKKINL ERHSLRCDTE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLGSD LCRGLLEFAE GRPLGKSGLR WLKIHLANLY
601: AGGIEKQSYD GRLGFIEDHI HDIFDSADHP INGNRWWLTA EDPFQCLAAC INLSEALRSS SPNSFISHLP IHQDGSCNGL QHYAALGRDD LEAAAVNLVA
701: KEKPADVYTE IAVRVYDIMR QDSNKDPDTF PNALLAKVLI DQIDRKLVKQ TVMTSVYGVT YIGAREQIKR RLGEKGFVTD DRLLYAASCY AAKVTLAALG
801: EVFEAARGIM GWLGDCAKVI ACENQAVCWT TPLGLPVVQP YCKTERYQIR TSLQLLALQR EGSAVSVKKQ RSAFPPNFVH SLDSSHMMMT ALACNDAGLC
901: FAGVHDSFWT HPCDVEKMNQ ILREKFVELY NMPILENLLE GFQTTYPGLA FPPLPKRGDF DLQKVLDSPY FFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.