CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70786	Canola	cytosol, mitochondrion, nucleus	65.88	71.19
KRH07470	Soybean	cytosol, mitochondrion, nucleus	58.04	69.81
KRH63538	Soybean	cytosol, mitochondrion, nucleus	33.33	56.29
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	25.88	51.56
KRH72339	Soybean	cytosol, mitochondrion, nucleus	56.86	50.17
KRH63115	Soybean	mitochondrion	72.55	33.82
VIT_01s0010g00690.t01	Wine grape	mitochondrion	87.06	22.7
Solyc05g010660.2.1	Tomato	mitochondrion	86.67	22.26
Zm00001d022169_P001	Maize	mitochondrion	80.78	21.13
OQU90275	Sorghum	mitochondrion	80.39	21.0
GSMUA_Achr3P28120_001	Banana	mitochondrion	79.22	20.98
TraesCS5B01G164300.1	Wheat	plastid	81.57	20.72
TraesCS5D01G171600.1	Wheat	plastid	81.18	20.62
CDY33562	Canola	mitochondrion	77.25	20.54
CDX95968	Canola	mitochondrion	77.25	20.29
KRH01430	Soybean	plastid	83.14	20.27
CDY04262	Canola	mitochondrion	72.16	20.09
KRH45146	Soybean	mitochondrion	83.14	20.04
AT1G68990.2	Thale cress	mitochondrion	76.86	19.94
HORVU5Hr1G051530.5	Barley	mitochondrion	81.57	19.75
KRH03007	Soybean	plastid	71.76	19.24
CDY07360	Canola	mitochondrion	66.27	19.12
KRH54896	Soybean	plastid	72.16	18.91
TraesCS5A01G167300.2	Wheat	plastid	72.16	18.87
Os09t0246200-01	Rice	mitochondrion	58.82	15.77
KRH07469	Soybean	mitochondrion	37.65	11.97
KRH45285	Soybean	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.20	MapMan:15.6.1.1	EMBL:ACUP02005059	InterPro:DNA-dir_Rpol_phage-type
EnsemblPlantsGene:GLYMA_08G263100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0034245	UniProt:K7L904	EnsemblPlants:KRH45290	ProteinID:KRH45290
ProteinID:KRH45290.1	PFAM:PF00940	ScanProsite:PS00489	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672
UniParc:UPI000295ECD5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:28321271..28333204

Molecular Weight (calculated)

29235.3 Da

IEP (calculated)

8.212

GRAVY (calculated)

-0.291

Length

255 amino acids

Sequence
(BLAST)

001: MKRDAEKDPQ TNPNALHARR LINQVDRKLV KQTVMTSVYG VTYIGARDQI KRRLKERCAI EDDVELFAAS CYAARTTLTA LEEMFEAARS IMSWLGDCAK
101: VIASTNQAVQ WITPLGLPVV QPYRQFGRHL IKTSLQILTL QRETNKVMVK RQRTAFPPNF VHSLDGSHMM MTTVACKKAG LNFAGVHDSY WTHACDVDEM
201: NRILREKFVE LYDAPILENL LESFQKTFPA LNFPPLPERG DFDLQEVLES TYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.