CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003507	Potato	cytosol	20.32	84.31
KRH45290	Soybean	cytosol, mitochondrion, nucleus	20.04	83.14
KRH01430	Soybean	plastid	80.62	81.55
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	52.46	78.06
KRH63115	Soybean	mitochondrion	37.15	71.85
KRH07470	Soybean	cytosol, mitochondrion, nucleus	14.27	71.23
OQU90275	Sorghum	mitochondrion	63.14	68.44
PGSC0003DMT400003501	Potato	cytosol	42.91	67.56
GSMUA_Achr3P28120_001	Banana	mitochondrion	61.34	67.39
VIT_14s0083g00790.t01	Wine grape	cytosol	65.41	66.86
Zm00001d022169_P001	Maize	mitochondrion	61.44	66.67
TraesCS5D01G171600.1	Wheat	plastid	61.53	64.84
TraesCS5B01G164300.1	Wheat	plastid	61.44	64.74
Bra023533.1-P	Field mustard	mitochondrion	59.55	64.62
TraesCS5A01G167300.2	Wheat	plastid	59.26	64.31
Os09t0246200-01	Rice	mitochondrion	57.28	63.72
CDX85538	Canola	plastid	59.55	62.38
KRH63538	Soybean	cytosol, mitochondrion, nucleus	8.88	62.25
CDX90977	Canola	plastid	59.36	62.18
HORVU5Hr1G051530.5	Barley	mitochondrion	61.53	61.82
KRH07469	Soybean	mitochondrion	46.6	61.47
KRH45285	Soybean	mitochondrion	39.51	60.58
CDY26454	Canola	plastid	55.29	58.33
AT5G15700.2	Thale cress	plastid	57.84	58.23
CDX69507	Canola	mitochondrion	23.72	57.18
KRH72339	Soybean	cytosol, mitochondrion, nucleus	15.5	56.75
KRH03007	Soybean	plastid	49.62	55.2
KRH54896	Soybean	plastid	49.81	54.16
Bra008681.1-P	Field mustard	plastid	24.57	52.95
Solyc02g089330.2.1	Tomato	cytosol	9.92	33.44

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100781410	MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:A0A0R0ISI6	EMBL:ACUP02004996	ncoils:Coil
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	EnsemblPlantsGene:GLYMA_08G253800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075
InterPro:IPR037159	EnsemblPlants:KRH45146	ProteinID:KRH45146	ProteinID:KRH45146.1	PFAM:PF00940	PFAM:PF14700
ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N
SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0006EDB7EB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:22342610..22370149

Molecular Weight (calculated)

120340.0 Da

IEP (calculated)

8.953

GRAVY (calculated)

-0.452

Length

1058 amino acids

Sequence
(BLAST)

0001: MWRHAAKHAC RGSIRQSFHP SRLLSLSHGS IFSPKREAFL YSVARLNCIG RGDFQFQFGA KGYSGVAEAA SSTDVEEDGV FVDEIQQLLL QEMNDEVESQ
0101: LVEEEGAPID EIQQLLLHEM HKEERNELVE EQAAPGDGIR GLFQGMKKEK QKKVVGYNRW QNEGKGVGQC RYQELRRRQV KIETETWEEA AKEYRELLMD
0201: MCEHKLAPNL PYMKSLFLGW FEPLRDAIVK EQEMYGEGKN RTAYVPYFVQ LPADKMAVIA MHKLMGLLMT GTEHATVGTA RVVQAACGIG DAIENEVRIH
0301: KFLEKTKKKK GDRSKKNKAS ESVADIKEEQ KLRKKVIDLM KKQKLVAVRG LVKGKDDTKP WGAAIKTKVG SRLIELLMQT AYIQPPPDQL LDAAPDIRPA
0401: FVHSFRTVAK VSAKASKRYG IVQCDPLILK GLERTAKNMV IPYMPMLVPP VNWSGYDKGG HLFLPSYVMR THGARQQREA VKRAPRKQLE PVFEELWKDF
0501: FHKNTHDQAL DTLGHTKWRV NKKVLSVVDR IWASGGRIAD LVDRDDVPLP DKPVTDDEEK IKKWKWKCKS LQKENRERYS QRCDIELKLA VARKMKDEEG
0601: FYYPHNLDFR GRAYPMHPHL NHLGSDLCRG ILEFAEGRFL GKSGLQWLKI HLANLYAGGV DKLSHEGRLV FTENHFEDIF DSADKPLQGR RWWLKAEDPL
0701: QCLAVCITLT EALRSSSPET FISHIPVHQD GSCNGLQHYA ALGRDKLGAA AVNLVAGEKP ADVYSGIAAS PFLKMQILPC ERDDLKINSS VIEKSFLCRV
0801: SNIMQRDAQK DPAIFPDALH ARTLVNQVDR KLVKQTVMTS VYGVTYIGAR EQIKRRLKER NAISDDTELF GASCYAAKVT LTALEEMFQG ARGIMNWLGD
0901: CAKVIASENQ PVRWTTPLGL PVVQPYRKLG KHIIKTSLQM LTLQRETDKV MVTRQRTAFP PNFVHSLDGS HMMMTAVACK KEGLNFAGVH DSYWTHACDV
1001: DKMNRILREK FVELYETPVL ENLLESFQSS FPSLSFPSLP ERGDFDLREV LESPYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.