Factsheet for Zm00001d022169_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90275	Sorghum	mitochondrion	93.13	93.03
PGSC0003DMT400003507	Potato	cytosol	21.44	81.96
KRH45290	Soybean	cytosol, mitochondrion, nucleus	21.13	80.78
Os09t0246200-01	Rice	mitochondrion	75.38	77.29
TraesCS5D01G171600.1	Wheat	plastid	78.87	76.59
TraesCS5B01G164300.1	Wheat	plastid	78.77	76.49
TraesCS5A01G167300.2	Wheat	plastid	75.69	75.69
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	54.67	74.96
HORVU5Hr1G051530.5	Barley	mitochondrion	79.18	73.31
CDY70786	Canola	cytosol, mitochondrion, nucleus	16.92	69.92
KRH07470	Soybean	cytosol, mitochondrion, nucleus	15.18	69.81
GSMUA_Achr3P28120_001	Banana	mitochondrion	68.51	69.37
VIT_01s0010g00690.t01	Wine grape	mitochondrion	69.33	69.12
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	12.92	67.74
Zm00001d030829_P001	Maize	mitochondrion	13.85	67.5
Solyc05g010660.2.1	Tomato	mitochondrion	66.87	65.66
PGSC0003DMT400003501	Potato	cytosol	44.41	64.43
VIT_14s0083g00790.t01	Wine grape	cytosol	68.31	64.35
Bra023533.1-P	Field mustard	mitochondrion	63.59	63.59
KRH01430	Soybean	plastid	67.18	62.62
KRH07469	Soybean	mitochondrion	50.77	61.72
CDY33562	Canola	mitochondrion	60.62	61.63
KRH45146	Soybean	mitochondrion	66.67	61.44
CDX90977	Canola	plastid	63.59	61.39
CDX85538	Canola	plastid	63.59	61.39
KRH45285	Soybean	mitochondrion	43.18	61.01
CDX95968	Canola	mitochondrion	60.62	60.87
AT1G68990.2	Thale cress	mitochondrion	61.33	60.83
Bra004354.1-P	Field mustard	mitochondrion	60.41	60.66
Bra004010.1-P	Field mustard	plastid	54.77	59.2
CDX69507	Canola	mitochondrion	26.56	59.0
CDY04262	Canola	mitochondrion	55.08	58.62
CDY07360	Canola	mitochondrion	52.82	58.26
CDY26454	Canola	plastid	59.69	58.03
Zm00001d023696_P001	Maize	plastid	14.77	56.92
AT5G15700.2	Thale cress	plastid	61.13	56.71
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.05	55.35
Zm00001d021198_P001	Maize	cytosol	13.74	54.92
Zm00001d014049_P001	Maize	mitochondrion	11.38	54.41
Bra008681.1-P	Field mustard	plastid	27.18	53.97
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	7.08	53.91
Zm00001d034215_P001	Maize	mitochondrion	9.44	52.87
Zm00001d044404_P001	Maize	mitochondrion	6.56	52.46
Zm00001d046835_P002	Maize	plastid	52.41	51.56
Zm00001d007570_P001	Maize	cytosol	7.18	46.05
Zm00001d026323_P001	Maize	cytosol	7.18	46.05
Zm00001d035375_P002	Maize	mitochondrion, nucleus	5.74	45.16
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	6.46	34.24
Solyc02g089330.2.1	Tomato	cytosol	10.15	31.53

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:A0A1D6IJV3	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159	ProteinID:ONM59710.1	ProteinID:ONM59717.1
ProteinID:ONM59723.1	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002219A2D
EnsemblPlantsGene:Zm00001d022169	EnsemblPlants:Zm00001d022169_P001	EnsemblPlants:Zm00001d022169_T001	SEG:seg	:	:

Description

RNA polymerase T phage-like 1DNA-directed RNA polymerase

Coordinates

chr7:+:171696582..171710967

Molecular Weight (calculated)

110890.0 Da

IEP (calculated)

9.440

GRAVY (calculated)

-0.515

Length

975 amino acids

Sequence
(BLAST)

001: MWRRLPTRRL ASALLSSSPL QRATATHAPP LERHFPTTAS GLLPPSLLPP WQQEPRWFSS SAAAEAVSSE DAEELHHAIE EIVRAQPSPN LPQPQAVAEE
101: HQAPGRDHRS RHRRSGRGRH AEVLAAEHGM TYHRYTSLRR RQIRIETEAW EQAANEYREL LADMCEQKLA PNLPYVKSLF LGWFEPLRDQ IATEQELVAD
201: PGSRASHGPF FSMLPADMMA VITMHKLMGL LMTGSGDGSV RVIQAACQIG EAIEHEVRIN RFLEKTRKKN NKEMENEEEA GDTNIAIEQQ RLRKKVTDLM
301: KKQKLRQVRN IVKNQDKSRP WGQDAHAKVG SRLIDLFIGT AHIQPPASQS SDGLPDIRPA FRHEMRTMVK EQQKSSRRYG VIKCDPLVRQ GLDRTAKHMV
401: IPYMPMLIPP ICWTGYDKGA HLFLPSYVMR THGARQQRDA VKRAPREQMQ FVFEALNTLG STKWRVNKRV LSIVDRIWSN GGRLADLVDR TDVPVPEKPD
501: TEDETLLKNW KWHLRAAKKK NSERHSQRCD VELKLAVARK MKDEEGFYYP HNLDFRGRAY PMHPYLNHLG SDLCRGVLEF AEGRPLGKSG LRWLKIHLAN
601: LYAAGVDKLS YDGRIAFAEN HLEEIFDSAD RPLEGRRWWL GAEDPFQCLA VCMNLTEALR SSSPETTISH IPVHQDGSCN GLQHYAALGK DKLGAIAVNL
701: VAGEKPADVY TGIANRVMEI MRMDAQKDPS VEPDAARARL IVDQVDRKLV KQTVMTSVYG VTYIGAREQI RRRLKERGVI PNDSELFGAS CYAAKVTLTA
801: LGEMFQAARS IMNWLGDCAK VIACENEPVR WTTPLGLPVV QPYRKLGRHL IKTSLQVLTL QRETDKVMVK RQRTAFPPNF VHSLDGSHMM MTAVACKRQG
901: LNFAGVHDSY WTHASDVDTM NKILREKFVE LYDTPILENL LESFEKSFPK LKFPPLPERG DFDMKEVLES TYFFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.