Factsheet for Bra004354.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70786	Canola	cytosol, mitochondrion, nucleus	22.55	92.8
AT1G68990.2	Thale cress	mitochondrion	80.64	79.65
Bra004010.1-P	Field mustard	plastid	72.81	78.38
GSMUA_Achr3P28120_001	Banana	mitochondrion	62.0	62.51
OQU90275	Sorghum	mitochondrion	62.1	61.78
Bra023533.1-P	Field mustard	mitochondrion	62.0	61.74
Zm00001d022169_P001	Maize	mitochondrion	60.66	60.41
TraesCS5B01G164300.1	Wheat	plastid	61.69	59.66
TraesCS5D01G171600.1	Wheat	plastid	61.69	59.66
TraesCS5A01G167300.2	Wheat	plastid	59.32	59.08
Os09t0246200-01	Rice	mitochondrion	56.13	57.31
HORVU5Hr1G051530.5	Barley	mitochondrion	61.38	56.6
Bra039230.1-P	Field mustard	plastid	53.55	53.12
Bra032120.1-P	Field mustard	plastid	51.08	52.77
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.9	52.34
Bra008681.1-P	Field mustard	plastid	26.36	52.14

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	EnsemblPlantsGene:Bra004354	EnsemblPlants:Bra004354.1	EnsemblPlants:Bra004354.1-P	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159	UniProt:M4CJH0
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002541826	SEG:seg

Description

AT1G68990 (E=0.0) | DNA-directed RNA polymerase, mitochondrial (RPOMT)

Coordinates

chrA07:-:18176839..18181917

Molecular Weight (calculated)

109846.0 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.462

Length

971 amino acids

Sequence
(BLAST)

001: MWRNILGRAT LRKIKPFSDS TSASHFRGIF SSIDLGCGVR NRLPTNPVNE LGRLTSVLHN QPFAFRGLAT AAQTIDSTDP EDDSSSGSDE VNELMSAMEK
101: ETERVRKKAR LAAKQQMKVV AGMGAQKYYS LKQRQVKLET EEWEKAAKEC QEIIEDMCEQ KLAPNLPYVK SLFLGWFEPL RDAIQADLDG FKVKKGKIPY
201: ASYMEQLPAD MMAVITMHKM MGLLMTNAEG VGVVKVVNAA TQIGEAIEQE ARINSFMKKA KKKKNVVDDE SEGVDASGEI DTKETLKLKK QINTLLKKHK
301: VRQVRGIVKA HDSFKSWGQE AQVKVGARLI QLLMETAYIQ PPAEQFDDGP PEIRPAFKQS SRTVTIENKK LSRKYGCIEC DPLIRKGLDK SARHMVIPYL
401: PMLIPPQNWT GYDQGAHFFL PSYIMRTHGA KQQRVAIKRT PKAQLEPVFQ ALDTLGNTKW RINKKVLSLV DRIWANGGRV GGLVDRDDAP IPEEPDSEDQ
501: EEIKQWKWKM KEANKENSER HSQRCDVELK LEVARKMKDE EGFYFPHNVD FRGRAYPMHP YLNHLGSDLC RGILEFCEGK PLGESGLRWL KIHIANLYGG
601: GVDKFAYKDR VAFTESHLED IFDSSDRPLE GKRWRLNAED PFQCLAACMN LSEALRSPFP EAAISHIPIH QDGSCNGLQH YAALGRDQIG AAAVNLFTGE
701: KPADVYADIA ARVLNIMRQD AEEDPETFPN ATYAKLMLDQ VDRKLVKQTV MTSVYGVTYS GARDQIKKRL KERGAFADDS QNFHASCYAA RVTLKALEEM
801: FEAARAIMSW FGECAKIIAS QNKAVCWTTP LGLPVVQPYR KNERHLVKTT LQVLTLQRET EKVMARKQMT AFAPNFVHSL DGSHMMMTAV ACNKAGLSFA
901: GVHDSFWTHA CDVELMNNIL REKFVELYDK PILENLLESF QKSFPGLTFP PLPERGDFDL REVIRSPYFF N

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.