Factsheet for Bra004010.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07360	Canola	mitochondrion	84.48	86.2
Bra004354.1-P	Field mustard	mitochondrion	78.38	72.81
AT1G68990.2	Thale cress	mitochondrion	71.62	65.72
GSMUA_Achr3P28120_001	Banana	mitochondrion	59.09	55.35
OQU90275	Sorghum	mitochondrion	59.76	55.23
Zm00001d022169_P001	Maize	mitochondrion	59.2	54.77
TraesCS5B01G164300.1	Wheat	plastid	59.98	53.88
TraesCS5D01G171600.1	Wheat	plastid	59.98	53.88
Bra023533.1-P	Field mustard	mitochondrion	57.98	53.64
TraesCS5A01G167300.2	Wheat	plastid	57.54	53.23
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	7.32	51.56
HORVU5Hr1G051530.5	Barley	mitochondrion	59.87	51.28
Os09t0246200-01	Rice	mitochondrion	53.33	50.58
Bra039230.1-P	Field mustard	plastid	53.22	49.03
Bra032120.1-P	Field mustard	plastid	50.55	48.51
Bra008681.1-P	Field mustard	plastid	23.61	43.38

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	EnsemblPlantsGene:Bra004010	EnsemblPlants:Bra004010.1	EnsemblPlants:Bra004010.1-P	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159	UniProt:M4CIH6	PFAM:PF00940
PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf
InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI00025419DE	SEG:seg	:

Description

AT1G68990 (E=3e-214) | DNA-directed RNA polymerase, mitochondrial (RPOMT)

Coordinates

chrA07:+:16278686..16283195

Molecular Weight (calculated)

101665.0 Da

IEP (calculated)

9.689

GRAVY (calculated)

-0.452

Length

902 amino acids

Sequence
(BLAST)

001: MKNVRQKETK ENVGNIFGRA TSRKFKPFSG SPSGNKIHSI LSSIELVGSL QNRPPTNPFH QLGRASSVLH GQRFAFATAT QAIEDDSSSG SEEVNELMTE
101: TGMGAQKKYH SLKQRQVRLE TEEWERAARE CREIIEDMCE QKLAPNLPYV KSLFLGWFEP LRDAIRADLD AFKVKRGKIP YAPYMELLPA DMMAVITMHK
201: MMALLMTNAE GVGVVRVVNA ATNVGEAIEQ EARIKSFMQK GKMKNATSNT EAVDALGETG TKEAVKLKKQ INTLLKKHKV RRVSGIVKAH DSFKPWGQEA
301: QVKVGARLIQ LLLETAYIQP PAEQFDDGPP EIRPAFKQTS KNVTLENTKL SRRYGCIECD PLIRKGLDKS ARHVVIPYLP MLIPPRNWTG YDQGAHFFLP
401: SYLMRTNGSK QQRIVVNKTP KAQLEPVFKA LDTLGNTKWR INKKVLSLVD RIWANGGRLG GLVDRDDVPI PEEPDGEDQE ELKQWKWKFK EANKENSERH
501: SQRCDVELKL EVARKMKEEE GFYFPHNVDF RGRAYPMHPY LNHLGSDLCR GILEFCEGKP LGESGLRWLK VHIANLYAGG VDKGSLSALR SSVPEAAISH
601: IPIHQDGSCN GLQHYAALGR DKTGAAAVNL FTGEKPADIY ADIAARVLKI MQKDAEEDPE TFPYAKLMLD QVDRKLVKQT VMTTVYGVTY SGARNQIKKR
701: LKERGAFADD SQNFHAAYYA ARVTTNALEE MFGAARAIMI WFGECAKIIA SQNKPVCWTT PLGLPVVQPY RQPGRHLVKT TLQVLTIKRD TEKVKARKQM
801: TAFAPNFVHS LDASHMMMTA VACNKAGLSF AGVHDSFWTH ASDVDVMNRI LREKFVELYD KPVLENLLES FQKSFPSLRF PPLPERGDFD LREVIRSPYF
901: FN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.