Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G164300.1 | Wheat | plastid | 97.23 | 94.42 |
| TraesCS5D01G171600.1 | Wheat | plastid | 97.03 | 94.22 |
| HORVU5Hr1G051530.5 | Barley | mitochondrion | 95.18 | 88.13 |
| Os09t0246200-01 | Rice | mitochondrion | 77.54 | 79.5 |
| OQU90275 | Sorghum | mitochondrion | 76.0 | 75.92 |
| Zm00001d022169_P001 | Maize | mitochondrion | 75.69 | 75.69 |
| PGSC0003DMT400003507 | Potato | cytosol | 19.38 | 74.12 |
| KRH45290 | Soybean | cytosol, mitochondrion, nucleus | 18.87 | 72.16 |
| Solyc02g089340.2.1 | Tomato | cytosol, mitochondrion, nucleus | 52.51 | 72.01 |
| CDY70786 | Canola | cytosol, mitochondrion, nucleus | 16.82 | 69.49 |
| VIT_01s0010g00690.t01 | Wine grape | mitochondrion | 66.67 | 66.46 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 65.54 | 66.36 |
| Solyc05g010660.2.1 | Tomato | mitochondrion | 65.95 | 64.75 |
| PGSC0003DMT400003501 | Potato | cytosol | 44.51 | 64.58 |
| KRH07469 | Soybean | mitochondrion | 51.49 | 62.59 |
| VIT_14s0083g00790.t01 | Wine grape | cytosol | 65.95 | 62.13 |
| KRH45285 | Soybean | mitochondrion | 43.49 | 61.45 |
| Bra023533.1-P | Field mustard | mitochondrion | 61.23 | 61.23 |
| KRH01430 | Soybean | plastid | 65.64 | 61.19 |
| CDY33562 | Canola | mitochondrion | 59.18 | 60.17 |
| CDX90977 | Canola | plastid | 61.95 | 59.8 |
| CDX85538 | Canola | plastid | 61.85 | 59.7 |
| CDX95968 | Canola | mitochondrion | 59.28 | 59.53 |
| Bra004354.1-P | Field mustard | mitochondrion | 59.08 | 59.32 |
| KRH45146 | Soybean | mitochondrion | 64.31 | 59.26 |
| AT1G68990.2 | Thale cress | mitochondrion | 58.87 | 58.39 |
| KRH07470 | Soybean | cytosol, mitochondrion, nucleus | 12.62 | 58.02 |
| Bra004010.1-P | Field mustard | plastid | 53.23 | 57.54 |
| CDY04262 | Canola | mitochondrion | 53.64 | 57.1 |
| CDY07360 | Canola | mitochondrion | 51.49 | 56.79 |
| CDY26454 | Canola | plastid | 57.85 | 56.23 |
| AT5G15700.2 | Thale cress | plastid | 59.69 | 55.38 |
| CDX69507 | Canola | mitochondrion | 24.1 | 53.53 |
| TraesCS7A01G503900.1 | Wheat | plastid | 51.08 | 52.48 |
| Bra008681.1-P | Field mustard | plastid | 24.92 | 49.49 |
| Bra027253.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 4.51 | 34.38 |
| Solyc02g089330.2.1 | Tomato | cytosol | 10.67 | 33.12 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.150.20 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 |
| MapMan:15.6.1.1 | Gene3D:3.30.70.370 | InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR024075 |
| InterPro:IPR037159 | PFAM:PF00940 | PFAM:PF14700 | ScanProsite:PS00489 | ScanProsite:PS00900 | PANTHER:PTHR10102 |
| PANTHER:PTHR10102:SF1 | InterPro:RNA_POL_N_sf | InterPro:RPOL_N | SMART:SM01311 | SUPFAM:SSF56672 | EnsemblPlantsGene:TraesCS5A01G167300 |
| EnsemblPlants:TraesCS5A01G167300.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:356180893..356190813
Molecular Weight (calculated)
109112.0 Da
IEP (calculated)
9.469
GRAVY (calculated)
-0.414
Length
975 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPAPTPAAE TAICPPSPPP PPPPPVLLPT KAPALMWRRL PSRRLASALL SASAPQLPPP PLHRLLLPAP AAAPGILPPA RLLWGQPPSR FASSSAAAAE
101: AVSSEEVDEP HHAPEEIVRL GPNTKLPVAE AAAAGQAGKK ERRRGRGQGR QLAELAAEHG IGYSKYVSLR QRQIRIETEA WEQAAKEYRE LLADMCEHKL
201: APNLPYVKSL FLGWFEPLRD QIIAEQELVS ERGTRASHAP YFNMLPADMM AVITMHKLMG LLMTGSGDGS VRVIQAACQI GEAVEHEVRI HKFLEKTKKK
301: NTKEVDKVVE AVDADIAKEQ ERLRKKVTDL MKKQKIRQVR HLVKKQDSTR PWGQDAHAKV GSRLIELFIE TAHIQPPASQ SGDSTPEIRP AFTHEMRTVA
401: REQQKSRRYG VIKCDPLVRQ GLDRTAKHMV IPYMPMLIPP INWTGYDKGA HLFLPSYVMR THGARQQREA VKKAPKEQMQ TIFEALDNLG STKWRVNKKV
501: LSIVDRIWSS GGRLADLVDR ADVSLPEKPD TEDEAELKKW RWSMRSAKKE NSERHSQRCD VELKLAVARK MKEEAGFYYP HNLDFRGRAY PMHPYLNHLG
601: SDLCRGVLEF SEGRPLGESG LRWLKIHLAN LYGGGVDKLS YDGRIAFTEN HLDDIFDSAN RPLEGKRWWL EAEDPFQCLA VCMDLNEALR SPSPETVISH
701: IPVHQDGSCN GLQHYAALGR DKLGAVAVNL VSGEKPADVY SGIAARVVEI MKRDAQKDPA KDADAARARL LVDQVDRKLV KQTVMTSVYG VTYVGAREQI
801: KRRLKERGVI ADDSELFGAS CYAAKVTLTA LGEMFEAARS IMTWLGDCAK VIACENEPVR WTTPLGLPVV QPYRKLGRHL IKTSLQVLTL QRETDKVMVK
901: RQRTAFPPNF VHSLDGSHMM MTAVACKKQG LYFAGVHDSY WTHACDVDTM NKILREKFVE LYDAPILENR GEILI
101: AVSSEEVDEP HHAPEEIVRL GPNTKLPVAE AAAAGQAGKK ERRRGRGQGR QLAELAAEHG IGYSKYVSLR QRQIRIETEA WEQAAKEYRE LLADMCEHKL
201: APNLPYVKSL FLGWFEPLRD QIIAEQELVS ERGTRASHAP YFNMLPADMM AVITMHKLMG LLMTGSGDGS VRVIQAACQI GEAVEHEVRI HKFLEKTKKK
301: NTKEVDKVVE AVDADIAKEQ ERLRKKVTDL MKKQKIRQVR HLVKKQDSTR PWGQDAHAKV GSRLIELFIE TAHIQPPASQ SGDSTPEIRP AFTHEMRTVA
401: REQQKSRRYG VIKCDPLVRQ GLDRTAKHMV IPYMPMLIPP INWTGYDKGA HLFLPSYVMR THGARQQREA VKKAPKEQMQ TIFEALDNLG STKWRVNKKV
501: LSIVDRIWSS GGRLADLVDR ADVSLPEKPD TEDEAELKKW RWSMRSAKKE NSERHSQRCD VELKLAVARK MKEEAGFYYP HNLDFRGRAY PMHPYLNHLG
601: SDLCRGVLEF SEGRPLGESG LRWLKIHLAN LYGGGVDKLS YDGRIAFTEN HLDDIFDSAN RPLEGKRWWL EAEDPFQCLA VCMDLNEALR SPSPETVISH
701: IPVHQDGSCN GLQHYAALGR DKLGAVAVNL VSGEKPADVY SGIAARVVEI MKRDAQKDPA KDADAARARL LVDQVDRKLV KQTVMTSVYG VTYVGAREQI
801: KRRLKERGVI ADDSELFGAS CYAAKVTLTA LGEMFEAARS IMTWLGDCAK VIACENEPVR WTTPLGLPVV QPYRKLGRHL IKTSLQVLTL QRETDKVMVK
901: RQRTAFPPNF VHSLDGSHMM MTAVACKKQG LYFAGVHDSY WTHACDVDTM NKILREKFVE LYDAPILENR GEILI
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L
Arabidopsis Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.