CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95968	Canola	mitochondrion	97.39	96.19
CDY70786	Canola	cytosol, mitochondrion, nucleus	22.84	92.8
CDY04262	Canola	mitochondrion	77.89	81.55
CDY07360	Canola	mitochondrion	73.41	79.64
AT1G68990.2	Thale cress	mitochondrion	80.71	78.74
KRH45290	Soybean	cytosol, mitochondrion, nucleus	20.54	77.25
KRH07470	Soybean	cytosol, mitochondrion, nucleus	14.6	66.04
VIT_01s0010g00690.t01	Wine grape	mitochondrion	65.07	63.8
Solyc05g010660.2.1	Tomato	mitochondrion	64.75	62.54
GSMUA_Achr3P28120_001	Banana	mitochondrion	62.25	61.99
OQU90275	Sorghum	mitochondrion	62.57	61.48
Zm00001d022169_P001	Maize	mitochondrion	61.63	60.62
KRH07469	Soybean	mitochondrion	50.37	60.22
TraesCS5B01G164300.1	Wheat	plastid	62.57	59.76
TraesCS5D01G171600.1	Wheat	plastid	62.57	59.76
CDX90977	Canola	plastid	62.57	59.41
TraesCS5A01G167300.2	Wheat	plastid	60.17	59.18
CDX85538	Canola	plastid	62.15	59.01
KRH45285	Soybean	mitochondrion	42.23	58.7
Os09t0246200-01	Rice	mitochondrion	56.83	57.31
HORVU5Hr1G051530.5	Barley	mitochondrion	62.46	56.89
CDY26454	Canola	plastid	58.08	55.53
CDX69507	Canola	mitochondrion	25.23	55.13
CDY34797	Canola	plastid	54.33	54.27
CDX76837	Canola	plastid	54.43	53.76
CDY39695	Canola	plastid	54.22	53.44
CDY20283	Canola	plastid	54.33	53.38
CDY44514	Canola	cytosol	6.26	48.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078H7Y5	UniProt:A0A078H7Y5	EnsemblPlants:CDY33562	ProteinID:CDY33562
ProteinID:CDY33562.1	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:GSBRNA2T00054851001
InterPro:IPR024075	InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900
PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672
UniParc:UPI0004EDC6CB	SEG:seg	:	:	:	:

Description

BnaC06g29900DDNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078H7Y5]

Coordinates

chrLK032317:+:115129..120670

Molecular Weight (calculated)

108580.0 Da

IEP (calculated)

8.920

GRAVY (calculated)

-0.442

Length

959 amino acids

Sequence
(BLAST)

001: MWRNIFGRAT LRKIKPFSDS TSATHFRGII SSINLSGGVR NQLATNPVNE LGRLTSVLHN HPFAFRGLAT AAQTIDSDDS SSGSDEVNEL MSAMEKETER
101: VRKKARLAAK QPMKVVAGMG AQKYYSLKQR QVKLETEEWE KAAKECQEII EDMCEQKLAP NLPYVKSLFL GWFEPLRDAI QADLDGFKVK KGKIPYASYM
201: EQLPADMMAV ITMHKMMGLL MTNAEGVGVV KVVNAATQIG EAIEQEARIN SFMKKAKKKK NVVDDESEAT KETLKLKKQI NTLLKKHKVR QVRGIVKAHD
301: SFKSWGQEAQ VKVGARLIQL LMETAYIQPP AEQFDDGPPE IRPAFKQSSR TVTIENKKLS RKYGCIECDP LIRKGLDKSA RHMVIPYLPM LIPPQNWTGY
401: DQGAHFFLPS YIMRTHGAKQ QRIAIKRTPK AQLEPVFKAL DTLGNTKWRI NKKVLSLVDR IWANGGRVGG LVDRDDVPIP EEPDSEDQEE IKQWKWKMKE
501: ANKENSERHS QRCDVELKLE VARKMKDEEG FYFPHNVDFR GRAYPMHPYL NHLGSDLCRG ILEFCEGKPL GESGLRWLKI HIANLYGGGV DKFAYKDRVA
601: FAESHLEDIF DSSDRPLEGK RWWLNAEDPF QCLAACMNLS EALRSPFPEA AVSHIPIHQD GSCNGLQHYA ALGRDQIGAA AVNLFTGEKP ADVYADIAAR
701: VLNIMRQDAE EDPETFPNAT YAKLMLDQVD RKLVKQTVMT SVYGVTYSGA RDQIKKRLKE RGAFADDSQN FHASCYAARV TLKALEEMFE AARAIMSWFG
801: ECAKIIASQN KAVCWTTPLG LPVVQPYRKN ERHLVKTTLQ VLTLQRETEK VMARKQMTAF APNFVHSLDG SHMMMTAVAC NKAGLSFAGV HDSFWTHACD
901: VELMNNILRE KFVELYDKPI LENLLESFQK SFPGLTFPPL PERGDFDLRE VIRSPYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.