CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33562	Canola	mitochondrion	96.19	97.39
CDY70786	Canola	cytosol, mitochondrion, nucleus	22.55	92.8
CDY04262	Canola	mitochondrion	77.34	81.99
CDY07360	Canola	mitochondrion	72.81	79.98
AT1G68990.2	Thale cress	mitochondrion	80.64	79.65
KRH45290	Soybean	cytosol, mitochondrion, nucleus	20.29	77.25
KRH07470	Soybean	cytosol, mitochondrion, nucleus	14.42	66.04
VIT_01s0010g00690.t01	Wine grape	mitochondrion	64.88	64.42
Solyc05g010660.2.1	Tomato	mitochondrion	63.95	62.54
GSMUA_Achr3P28120_001	Banana	mitochondrion	61.79	62.31
OQU90275	Sorghum	mitochondrion	62.2	61.89
Zm00001d022169_P001	Maize	mitochondrion	60.87	60.62
KRH07469	Soybean	mitochondrion	49.85	60.35
CDX90977	Canola	plastid	62.62	60.2
TraesCS5B01G164300.1	Wheat	plastid	61.9	59.86
TraesCS5D01G171600.1	Wheat	plastid	61.9	59.86
CDX85538	Canola	plastid	62.2	59.8
TraesCS5A01G167300.2	Wheat	plastid	59.53	59.28
KRH45285	Soybean	mitochondrion	42.02	59.13
Os09t0246200-01	Rice	mitochondrion	56.33	57.52
HORVU5Hr1G051530.5	Barley	mitochondrion	61.59	56.79
CDY26454	Canola	plastid	57.78	55.93
CDX69507	Canola	mitochondrion	25.03	55.35
CDY34797	Canola	plastid	53.97	54.58
CDX76837	Canola	plastid	54.17	54.17
CDY39695	Canola	plastid	53.66	53.55
CDY20283	Canola	plastid	53.66	53.38
CDY44514	Canola	cytosol	6.18	48.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078E9B6	EnsemblPlants:CDX95968	ProteinID:CDX95968	ProteinID:CDX95968.1
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00101988001	InterPro:IPR024075	InterPro:IPR037159
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0004EDD890	SEG:seg

Description

BnaA07g27630D

Coordinates

chrLK031892:+:337001..343531

Molecular Weight (calculated)

109724.0 Da

IEP (calculated)

8.525

GRAVY (calculated)

-0.448

Length

971 amino acids

Sequence
(BLAST)

001: MWRNILGRAT LRKIKPFSDS TSASHFRGII SSINLAGGVP NRLPTNPVNE LGRLTSVLHN HPFAFRGLAT AAQTIDSTDP EDDSSSGSDE VNELMSAMEK
101: ETERVRKKAR LAAKQPVKVV AGMGAQKYYS LKQRQVKLET EEWEKAAKEC QEIIEDMCEQ KLAPNLPYVK SLFLGWFEPL RDAIQADLDG FKVKKGKIPY
201: ASYMEQLPAD MMAVITMHKM MGLLMTNAEG VGVVKVVNAA TQIGEAIEQE ARINSFMKKA KKKKNVVDDE SEGVDASGEV DTKETLKLKK QINTLLKKHK
301: VRQVRGIVKA HDSFKSWGQE AQVKVGARLI QLLMETAYIQ PPAEQFDDGP PEIRPAFKQS SRTVTIENKK LSRKYGCIEC DPLIRKGLDK SARHMVIPYL
401: PMLIPPQNWT GYDQGAHFFL PSYIMRTHGA KQQRIAIKRT PKAQLEPVFK ALDTLGNTKW RINKKVLSLV DRIWANGGRV GGLVDRDDVP IPEEPDSEDQ
501: EEIKQWKWKM KEANKENSER HSQRCDVELK LEVARKMKDE EGFYFPHNVD FRGRAYPMHP YLNHLGSDLC RGILEFCEGK PLGESGLRWL KIHIANLYGG
601: GVDKFAYKDR VAFTESHLED IFDSSDRPLE GKRWWLNAED PFQCLAACMN LSEALRSPFP EAAISHIPIH QDGSCNGLQH YAALGRDQIG AAAVNLFTGE
701: KPADVYADIA ARVLNIMRQD AEEDPETFPN ATYAKLMLDQ VDRKLVKQTV MTSVYGVTYS GARDQIKKRL KERGAFADDS QNFHASCYAA RVTLKALEEM
801: FEAARAIMSW FGECAKIIAS QNKAVCWTTP LGLPVVQPYR KNERHLVKTT LQVLTLQRET EKVMARKQMT AFAPNFVHSL DGSHMMMTAV ACNKAGLSFA
901: GVHDSFWTHA CDVELMNNIL REKFVELYDK PILENLLESF QKSFPGLTFP PLPERGDFDL REVIRSPYFF N

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.