CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85538	Canola	plastid	96.24	96.24
CDY26454	Canola	plastid	78.32	78.86
PGSC0003DMT400003507	Potato	cytosol	19.8	78.43
AT5G15700.2	Thale cress	plastid	80.79	77.64
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	50.4	71.59
CDY70786	Canola	cytosol, mitochondrion, nucleus	16.34	69.92
CDX69507	Canola	mitochondrion	29.31	67.43
VIT_14s0083g00790.t01	Wine grape	cytosol	67.13	65.51
PGSC0003DMT400003501	Potato	cytosol	43.47	65.33
GSMUA_Achr3P28120_001	Banana	mitochondrion	61.39	64.38
OQU90275	Sorghum	mitochondrion	61.88	64.04
Zm00001d022169_P001	Maize	mitochondrion	61.39	63.59
CDX95968	Canola	mitochondrion	60.2	62.62
CDY33562	Canola	mitochondrion	59.41	62.57
TraesCS5D01G171600.1	Wheat	plastid	61.78	62.15
TraesCS5B01G164300.1	Wheat	plastid	61.78	62.15
TraesCS5A01G167300.2	Wheat	plastid	59.8	61.95
Os09t0246200-01	Rice	mitochondrion	57.43	60.99
KRH01430	Soybean	plastid	62.97	60.8
KRH45146	Soybean	mitochondrion	62.18	59.36
HORVU5Hr1G051530.5	Barley	mitochondrion	61.68	59.16
CDY04262	Canola	mitochondrion	53.37	58.84
CDY07360	Canola	mitochondrion	50.79	58.03
CDY34797	Canola	plastid	54.36	57.19
CDX76837	Canola	plastid	54.16	56.33
CDY20283	Canola	plastid	54.06	55.94
CDY39695	Canola	plastid	53.86	55.91
CDY44514	Canola	cytosol	5.84	47.2
Solyc02g089330.2.1	Tomato	cytosol	12.67	40.76

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078DPW5	EnsemblPlants:CDX90977	ProteinID:CDX90977	ProteinID:CDX90977.1
ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00151733001	InterPro:IPR024075
InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0004EDD4CD
SEG:seg	:	:	:	:	:

Description

BnaC02g06200D

Coordinates

chrLK031865:+:60522..66111

Molecular Weight (calculated)

114640.0 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.481

Length

1010 amino acids

Sequence
(BLAST)

0001: MSSAQTPLFS PNQTNVFNHR KPLIPCRNPV SESFPMWRNI AKHAISRSQA RFGSKGRSFL AFSHDPIVKG SSFRFPLLGS IPDSKCHESG FSNRVGSGLS
0101: NSDCCLKGFL ARGYTSVAEE VSSTDIEEDP SIADEVEELL KEMKKEKKRE DHRSWRMKNQ ETIGMGRSKY RNLWRRQVKI ETEEWERAAN EYRELLADMC
0201: EQKLAPNLPY VKSLFLGWFE PLRDVIGKEQ ELFRLGKSKA VYAHYIDQLP ADMVAVITMH KLMGHLMTGG DNGCVKVVQA ACSVGDAIEQ EIRICTFLDK
0301: TRKKKEDDNE ESGEVENGNP MKEQDKLRKK VNDLIKKQKL SAVRKILQSH DYTKPWSADA RAKVGSHLIE LLVRTAYIQS PTNQQDNDLP DVRPAFKHTF
0401: KTVAQGSMKS GRKYGVIECD PLVRKGLEKT GRYAVMPYMP MLVPPLNWSG YDKGAYLFLA SYIMKTHGAK QQREAIKSAP KGQLKPVFEA LDTLGSTRWR
0501: VNKRVLTVVD RIWSSGGCTA DLVDRSDVPL PEKPDTEDES ILKKWKWEMK SAKKENSERH SMRCDIELKL SVARKMKDEE GFYYPHNVDF RGRAYPMPPH
0601: LNHLGSDLCR GVLEFAEGRP LGSPGLRWLK IHLANLYAGG VDKLSYEGRL AFTESHLDDI FDSADRPLEG NRWWLQAEDP FQCLAVCINL TEALRSPSPE
0701: TVLSHIPIHQ DGSCNGLQHY AALGRDTIGA EAVNLVAGEK PADVYSEIAT RVLDIMRRDA EKDPEIYPDA LRAKKLINQV DRKLVKQTVM TSVYGVTYIG
0801: ARDQIKRRLK ERSAFRDDKE IFGAACYAAK VTLAAMDEMF EAARAIMHWF GECAKIIASE NETVRWTTPL GLPVVQPYLQ MGTKLVKTSL QTLSLQRETD
0901: KVIVRRQRTA FPPNFIHSLD GSHMMMTAVA CKRVGVCFAG VHDSFWTHAC DVDKLNKILR EKFVELYSQP ILENLLESFE KSFPHLEFPP LPERGDLDLK
1001: VVLESTYFFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.