Factsheet for Solyc02g089340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003507	Potato	cytosol	35.3	98.43
PGSC0003DMT400003501	Potato	cytosol	60.34	63.84
OQU90275	Sorghum	mitochondrion	75.81	55.23
VIT_14s0083g00790.t01	Wine grape	cytosol	79.61	54.69
Zm00001d022169_P001	Maize	mitochondrion	74.96	54.67
Solyc05g010660.2.1	Tomato	mitochondrion	75.95	54.38
GSMUA_Achr3P28120_001	Banana	mitochondrion	73.42	54.21
KRH01430	Soybean	plastid	78.2	53.15
TraesCS5D01G171600.1	Wheat	plastid	74.82	52.99
TraesCS5B01G164300.1	Wheat	plastid	74.82	52.99
TraesCS5A01G167300.2	Wheat	plastid	72.01	52.51
KRH45146	Soybean	mitochondrion	78.06	52.46
Bra023533.1-P	Field mustard	mitochondrion	71.59	52.21
CDX69507	Canola	mitochondrion	32.07	51.94
Os09t0246200-01	Rice	mitochondrion	68.78	51.42
HORVU5Hr1G051530.5	Barley	mitochondrion	75.11	50.71
CDX90977	Canola	plastid	71.59	50.4
CDX85538	Canola	plastid	71.59	50.4
Bra008681.1-P	Field mustard	plastid	33.19	48.07
CDY26454	Canola	plastid	66.95	47.46
AT5G15700.2	Thale cress	plastid	70.04	47.38
Solyc07g005930.2.1	Tomato	nucleus	65.12	46.67
Solyc02g089330.2.1	Tomato	cytosol	0.7	1.59

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0034245	InterPro:IPR024075	InterPro:IPR037159	UniProt:K4BC86	PFAM:PF00940	PFAM:PF14700
ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N
SMART:SM01311	SUPFAM:SSF56672	EnsemblPlantsGene:Solyc02g089340.2	EnsemblPlants:Solyc02g089340.2.1	UniParc:UPI0002768A8C	:

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:K4BC86]

Coordinates

chr2:+:51186987..51195309

Molecular Weight (calculated)

80799.4 Da

IEP (calculated)

9.127

GRAVY (calculated)

-0.422

Length

711 amino acids

Sequence
(BLAST)

001: MHFLMHQVRI HKFLEKTEKH KAEKDRNMED GEHATLEQKK LHKKVTSLMK KQKLRAVNQI VRSQDDSKPW GQDAKAKVGS RLIEFLLQTA YIQSPADQLA
101: VDPPDIRPAF IHSTRTLAKE TKSASRRYGV IQCDELVFKG LERTARHMVI PYMPMLVPPV KWTGYDKGGH LYLPSYVMRT HGARQQREAV KRTSRNQLQP
201: VFEALDTLGS TKWRINKRVL SVVDRIWAGG GRLADLVDRD DVPLPEEPDT EDEAVCTKWR WKVKSVKKEN RERHSQRCDI ELKLAVAHRM KDEEGFFYPH
301: NVDFRGRAYP MHPHLNHLGS DICRGVLEFA AGRPLGKSGL ALVKDTPCKF ISFTESHLDD IFDSADKPLE GRCWWLNAED PFQCLAVCIN LSEAVRSSSP
401: ETVISHVPVH QDGSCNGLQH YAALGRDKLG AAAVNLVAGE KPADVYSGIA ARVLDIMNRD AQRDPAEFPD AVRARVLVNQ VDRKLVKQTV MTSVYGVTYI
501: GARDQIKRRL KERGAIADDT ELFGAACYAA KVTLTALGEM FEAARSIMTW LGECAKIIAS ENEPVRWTTP LGLPVVQPYR KIGRHFIKTS LQILTLQRET
601: EKVMVKRQRT AFPPNFIHSL DGSHMMMTAV ACRRAGLNFA GVHDSYWTHA CDVDKLNRIL REKFVELYET PILEKLLEGF QVSYPTLSFP PLPERGDFDL
701: RDVIESPYFF N

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.