Factsheet for Solyc07g005930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028972	Potato	mitochondrion	46.67	98.3
KRH63115	Soybean	mitochondrion	43.15	78.25
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	13.1	69.89
KRH63538	Soybean	cytosol, mitochondrion, nucleus	10.58	69.54
Zm00001d030829_P001	Maize	mitochondrion	14.01	69.5
VIT_11s0037g00630.t01	Wine grape	plastid	67.14	68.03
KRH03007	Soybean	plastid	63.81	66.56
VIT_01s0010g03250.t01	Wine grape	cytosol	3.33	66.0
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	46.67	65.12
Os06t0652000-01	Rice	plastid	52.02	64.02
KRH72339	Soybean	cytosol, mitochondrion, nucleus	18.35	62.98
KRH54896	Soybean	plastid	61.69	62.9
CDY34797	Canola	plastid	60.69	62.71
CDY39695	Canola	plastid	60.99	62.18
CDX76837	Canola	plastid	60.79	62.1
CDY20283	Canola	plastid	60.89	61.89
Bra032120.1-P	Field mustard	plastid	58.17	61.38
Bra039230.1-P	Field mustard	plastid	60.48	61.29
AT2G24120.1	Thale cress	plastid	60.99	60.93
TraesCS7B01G411000.1	Wheat	nucleus	46.98	60.6
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	51.51	59.77
Zm00001d021198_P001	Maize	cytosol	14.52	59.02
Zm00001d023696_P001	Maize	plastid	14.92	58.5
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.35	57.23
Zm00001d014049_P001	Maize	mitochondrion	11.59	56.37
TraesCS7A01G503900.1	Wheat	plastid	53.53	55.95
EER88745	Sorghum	plastid	53.63	55.47
Zm00001d034215_P001	Maize	mitochondrion	9.68	55.17
Solyc05g010660.2.1	Tomato	mitochondrion	55.04	54.98
Zm00001d044404_P001	Maize	mitochondrion	6.65	54.1
Zm00001d007570_P001	Maize	cytosol	8.27	53.95
Zm00001d026323_P001	Maize	cytosol	8.27	53.95
Zm00001d046835_P002	Maize	plastid	53.73	53.78
Zm00001d035375_P002	Maize	mitochondrion, nucleus	5.95	47.58
GSMUA_Achr1P09550_001	Banana	mitochondrion	14.11	37.94
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	6.96	37.5
Solyc02g089330.2.1	Tomato	cytosol	7.06	22.29

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075	InterPro:IPR037159	UniProt:K4CB64	PFAM:PF00940
PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf
InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	EnsemblPlantsGene:Solyc07g005930.2	EnsemblPlants:Solyc07g005930.2.1	UniParc:UPI000276C1AD
SEG:seg	:	:	:	:	:

Description

DNA-directed RNA polymerase 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G24120) UniProtKB/Swiss-Prot;Acc:O24600]

Coordinates

chr7:+:764089..775345

Molecular Weight (calculated)

113677.0 Da

IEP (calculated)

9.325

GRAVY (calculated)

-0.409

Length

992 amino acids

Sequence
(BLAST)

001: MFFTHFNHVK SRYTNAQLAS SASYSPTPAS SQWRKAQKSQ KNCTFHGIYN QEFLKLSQTS SFPKTLKLPI IQLPITVHSE VVCVSTDENL TENLEELVNL
101: QKIPNGYPLV LQKESNKRVF IQDPPWVSSL FMNNLFVRAK QVKGVRREFR EIERRRRYAM LRRRQIKAET EAWEQMVEEY RELEREMCEK KLAPNLPYVK
201: KLMLGWFEPL RQAIEREQNA EMTQKHRTAY APHIDSLPAD KMAVIVMHKL MGLLMMGGKE ERCVQVVQAA VQIGMAVENE VRIHNFMEKT KKHQKHMTGA
301: QGQEDMSRET MILRKRVKSL IKRNRVVEVR KLMQSEEPES WGRDTQAKLG CRLLELLTET AYVQPPVDQS ADTPPDIRPA FRHVFRIATR DPGKNIVKKY
401: GVIECDPLVV VGVDRTVKQM MIPYVPMLVP PKKWRGYDKG GYLFLPSYLM RTHGSRRQQD AVRSVPAKQM QQVYEALDTL GSTKWRVNKR ILSVVETIWA
501: GGGNIAGLVD RKDVPIPELH SDDIMELKRW KWRVRKAKKI NQELHSQRCD TELKLSVARK LRDEEGFYYP HNLDFRGRAY PMHPHLNHLS SDLCRGILEF
601: AEGRPLGKSG LRWLKVHLAS LYAGGIEKLC YDARIAFVEN HIDDILDSAH NPLNGNRWWL NAEDPLQCLA ACINLSEAVK SLSPHTVISH LPIHQDGSCN
701: GLQHYAALGR DSMEAAAVNL VAGEKPADVY TEIALRVDHI IRGDSTKDPA TDPNALLAKL LIDQVDRKLV KQTVMTSVYG VTYVGAREQI KRRLEEKGLI
801: DDDRLLFTAS CYVTLAALGE LFQAARGTMT WLGDCAKVIA SENQPVRWTT PLGLPVVQPY FKTQRHVIRT SLQVLALQRE GDAVEVRKQR TAFPPNFVHS
901: LDGSHMMMTA VACRDAGLHF AGVHDSFWTH ACDVDQMNRI LREKFVELYS MPILEDLLES FQESYPALTF PPLPKRGDFD LREVLESPYF FN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.