Factsheet for Zm00001d034215_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044404_P001	Maize	mitochondrion	64.94	92.62
Zm00001d014049_P001	Maize	mitochondrion	93.1	79.41
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	66.67	62.37
Zm00001d035375_P002	Maize	mitochondrion, nucleus	37.36	52.42
Zm00001d030829_P001	Maize	mitochondrion	57.47	50.0
Zm00001d023696_P001	Maize	plastid	56.32	38.74
Zm00001d043127_P001	Maize	endoplasmic reticulum	68.97	37.74
Zm00001d021198_P001	Maize	cytosol	48.85	34.84
CDY44514	Canola	cytosol	16.09	22.4
PGSC0003DMT400028972	Potato	mitochondrion	52.3	19.32
KRH63115	Soybean	mitochondrion	53.45	17.0
TraesCS7B01G411000.1	Wheat	nucleus	66.67	15.08
Os06t0652000-01	Rice	plastid	67.82	14.64
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	69.54	14.15
EER88745	Sorghum	plastid	74.14	13.45
Zm00001d046835_P002	Maize	plastid	75.29	13.22
TraesCS7A01G503900.1	Wheat	plastid	70.11	12.86
Bra032120.1-P	Field mustard	plastid	59.2	10.96
CDY34797	Canola	plastid	59.2	10.73
CDX76837	Canola	plastid	59.77	10.71
CDY39695	Canola	plastid	59.2	10.59
Bra039230.1-P	Field mustard	plastid	59.2	10.52
CDY20283	Canola	plastid	58.62	10.45
KRH03007	Soybean	plastid	56.9	10.41
VIT_11s0037g00630.t01	Wine grape	plastid	58.05	10.32
AT2G24120.1	Thale cress	plastid	58.05	10.17
KRH54896	Soybean	plastid	55.17	9.87
Solyc07g005930.2.1	Tomato	nucleus	55.17	9.68
Zm00001d022169_P001	Maize	mitochondrion	52.87	9.44
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	56.9	5.6
KRH63538	Soybean	cytosol, mitochondrion, nucleus	1.72	1.99
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	1.72	1.63
KRH72339	Soybean	cytosol, mitochondrion, nucleus	1.15	0.69
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d007570_P001	Maize	cytosol	0.0	0.0
VIT_01s0010g03250.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:A0A1D6L678
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	ProteinID:ONM09809.1	PFAM:PF00940	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
SUPFAM:SSF56672	UniParc:UPI000843F591	EnsemblPlantsGene:Zm00001d034215	EnsemblPlants:Zm00001d034215_P001	EnsemblPlants:Zm00001d034215_T001	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr1:+:286965661..286966675

Molecular Weight (calculated)

19890.9 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.511

Length

174 amino acids

Sequence
(BLAST)

001: MMLLRLSGVK VEALQGSWTR QIFLCLNDQN QRTLMKCRNG STSIKKAKKT NRELHAERCD TKLKLSVARK MREEDEFYYP HNLDFCGRAY PMHPHLSHLG
101: LGLCRGVLEY AEGRPLGKSG LCWLKIHLAN KYGGGIEKLS HEGTLAFVEN QLFDIFDSSA NPVDGNYWWT NAED

Best Arabidopsis Sequence Match ( AT1G68990.2 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSVSRI
401: VDYARHMVIP YLPMLIPPQN WTGYDQGAHF FLPSYVMRTH GAKQQRTVMK RTPKEQLEPV YEALDTLGNT KWKINKKVLS LVDRIWANGG RIGGLVDRED
501: VPIPEEPERE DQEKFKNWRW ESKKAIKQNN ERHSQRCDIE LKLEVARKMK DEEGFYYPHN VDFRGRAYPI HPYLNHLGSD LCRGILEFCE GKPLGKSGLR
601: WLKIHIANLY AGGVDKLAYE DRIAFTESHL EDIFDSSDRP LEGKRWWLNA EDPFQCLAAC INLSEALRSP FPEAAISHIP IHQDGSCNGL QHYAALGRDK
701: LGADAVNLVT GEKPADVYTE IAARVLKIMQ QDAEEDPETF PNATYAKLML DQVDRKLVKQ TVMTSVYGVT YSGARDQIKK RLKERGTFED DSLTFHASCY
801: AAKITLKALE EMFEAARAIK SWFGDCAKII ASENNAVCWT TPLGLPVVQP YRKPGRHLVK TTLQVLTLSR ETDKVMARRQ MTAFAPNFIH SLDGSHMMMT
901: AVACNRAGLS FAGVHDSFWT HACDVDVMNT ILREKFVELY EKPILENLLE SFQKSFPDIS FPPLPERGDF DLRKVLESTY FFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.