Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045595_P001 | Maize | cytosol, mitochondrion, nucleus | 18.06 | 96.24 |
| Zm00001d026323_P001 | Maize | cytosol | 14.73 | 96.05 |
| Zm00001d007570_P001 | Maize | cytosol | 14.63 | 95.39 |
| EER88745 | Sorghum | plastid | 91.62 | 94.68 |
| Zm00001d030829_P001 | Maize | mitochondrion | 18.87 | 93.5 |
| Os06t0652000-01 | Rice | plastid | 73.76 | 90.69 |
| Zm00001d021198_P001 | Maize | cytosol | 22.0 | 89.34 |
| HORVU7Hr1G112980.9 | Barley | mitochondrion, nucleus, plastid | 74.97 | 86.9 |
| TraesCS7A01G503900.1 | Wheat | plastid | 81.43 | 85.04 |
| TraesCS7B01G411000.1 | Wheat | nucleus | 64.98 | 83.75 |
| Zm00001d014049_P001 | Maize | mitochondrion | 16.25 | 78.92 |
| Zm00001d023696_P001 | Maize | plastid | 19.78 | 77.47 |
| Zm00001d034215_P001 | Maize | mitochondrion | 13.22 | 75.29 |
| Zm00001d043127_P001 | Maize | endoplasmic reticulum | 24.02 | 74.84 |
| Zm00001d035375_P002 | Maize | mitochondrion, nucleus | 9.08 | 72.58 |
| PGSC0003DMT400028972 | Potato | mitochondrion | 34.31 | 72.19 |
| Zm00001d043100_P001 | Maize | endoplasmic reticulum, extracellular | 13.22 | 71.2 |
| KRH63115 | Soybean | mitochondrion | 38.35 | 69.47 |
| Zm00001d044404_P001 | Maize | mitochondrion | 8.38 | 68.03 |
| VIT_01s0010g03250.t01 | Wine grape | cytosol | 3.23 | 64.0 |
| KRH63538 | Soybean | cytosol, mitochondrion, nucleus | 8.98 | 58.94 |
| CDY34797 | Canola | plastid | 53.78 | 55.52 |
| VIT_11s0037g00630.t01 | Wine grape | plastid | 54.79 | 55.46 |
| CDX76837 | Canola | plastid | 53.99 | 55.1 |
| CDY39695 | Canola | plastid | 53.58 | 54.57 |
| Bra039230.1-P | Field mustard | plastid | 53.78 | 54.44 |
| CDY20283 | Canola | plastid | 53.28 | 54.1 |
| Solyc07g005930.2.1 | Tomato | nucleus | 53.78 | 53.73 |
| KRH03007 | Soybean | plastid | 51.46 | 53.63 |
| Bra032120.1-P | Field mustard | plastid | 50.86 | 53.62 |
| AT2G24120.1 | Thale cress | plastid | 53.38 | 53.27 |
| KRH54896 | Soybean | plastid | 51.87 | 52.83 |
| Zm00001d022169_P001 | Maize | mitochondrion | 51.56 | 52.41 |
| KRH72339 | Soybean | cytosol, mitochondrion, nucleus | 14.93 | 51.21 |
| CDY44514 | Canola | cytosol | 6.16 | 48.8 |
| GSMUA_Achr1P15880_001 | Banana | cytosol, mitochondrion, nucleus | 58.93 | 33.05 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.150.20 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 |
| MapMan:15.6.1.1 | Gene3D:3.30.70.370 | EntrezGene:541776 | UniProt:A0A1D6P567 | ProteinID:AQL05092.1 | ProteinID:AQL05099.1 |
| InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR024075 | InterPro:IPR037159 |
| PFAM:PF00940 | PFAM:PF14700 | ScanProsite:PS00489 | ScanProsite:PS00900 | PANTHER:PTHR10102 | PANTHER:PTHR10102:SF1 |
| InterPro:RNA_POL_N_sf | InterPro:RPOL_N | SMART:SM01311 | SUPFAM:SSF56672 | UniParc:UPI0008436816 | EnsemblPlantsGene:Zm00001d046835 |
| EnsemblPlants:Zm00001d046835_P002 | EnsemblPlants:Zm00001d046835_T002 | SEG:seg | : | : | : |
Description
RNA polymerase2 RNA polymerase2
Coordinates
chr9:+:107924548..107935827
Molecular Weight (calculated)
112212.0 Da
IEP (calculated)
8.524
GRAVY (calculated)
-0.378
Length
991 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLLLYPFSA CVPPPRALLR RLSPPPPMAV VAPLPSAVRI IPSVGTLDLP ALPPPPTDDF HWLDLFAFLN SPADTYHQIP AQGEEELEAG LELELELELE
101: KHAEVERQRG RARRAQLRRL RQRQVKAETE AWARAAEEYR EIEREMLDRR LAPALPYVKA LFVGWFEPLR DAIARDQDVQ RRKRVKHVYA KYLLLLPADK
201: VAVIVMHKMM GLLMSSKDGT GSVRVVQAAH CIGEAVEREF KVQSFFQKSR KKKIQGENDP ALEKEQAKCR KRVKSLVKRR KMSEAQRLVQ QELELEEWGT
301: EAQVKLGSRL IELLLDSAFV QPPADQTPDS SPDIRPAFKH VLRQPIIENG RLKKKHWVIE CDHLVHEGFE STARHVDIPY LPMLVPPKKW KGYDKGGHLF
401: LPSYIMRTHG VKDQKDAINS VPRKQLRKVF EALDILGSTK WRVNRRVHDV VETIWSQGGG IAGLVDKANI PLPERPESED PDEMQKWKWS LKKAKKTNRE
501: LHAERCDTEL KLSVARKMRE EDGFYYPHNL DFRGRAYPMH PHLSHLGSDL CRGVLEYAEG RPLGKSGLCW LKIHLANKYG GGIEKLSHEG KLAFVENQLF
601: DIFDSAANPV DGNCWWTNAE DPFQCLAACM DLSDALRSPS PYHAVSHLPI HQDGSCNGLQ HYAALGRDYM GAVAVNLVPG EKPADIYSEI ASRVLNVVCE
701: DSMKDPATNP TASLARVLVD QVSLLSHPSS VFLNSSKKYP CTHSISSNKT VEDMGIGSLQ VDRKLVKQTV MTSVYGVTYI GARQQITKRL QEKGLITDDK
801: LLYDVSCYAT RVTLDALGQM FQSARGIMAW LGDCAKMIAS KNQPVKWTSP VGLPVVQPYK KYKNYMIRTS LQCLALRREG DAIAIQRQKA AFPPNFVHSL
901: DSSHMMMTAI ACKESGLHFA GVHDSFWVHA CDVDQMNQIL RQQFVELYSM PILENLLEEF QTSFPTLEFP PCPPQGNFDV REVLTSTYFF N
101: KHAEVERQRG RARRAQLRRL RQRQVKAETE AWARAAEEYR EIEREMLDRR LAPALPYVKA LFVGWFEPLR DAIARDQDVQ RRKRVKHVYA KYLLLLPADK
201: VAVIVMHKMM GLLMSSKDGT GSVRVVQAAH CIGEAVEREF KVQSFFQKSR KKKIQGENDP ALEKEQAKCR KRVKSLVKRR KMSEAQRLVQ QELELEEWGT
301: EAQVKLGSRL IELLLDSAFV QPPADQTPDS SPDIRPAFKH VLRQPIIENG RLKKKHWVIE CDHLVHEGFE STARHVDIPY LPMLVPPKKW KGYDKGGHLF
401: LPSYIMRTHG VKDQKDAINS VPRKQLRKVF EALDILGSTK WRVNRRVHDV VETIWSQGGG IAGLVDKANI PLPERPESED PDEMQKWKWS LKKAKKTNRE
501: LHAERCDTEL KLSVARKMRE EDGFYYPHNL DFRGRAYPMH PHLSHLGSDL CRGVLEYAEG RPLGKSGLCW LKIHLANKYG GGIEKLSHEG KLAFVENQLF
601: DIFDSAANPV DGNCWWTNAE DPFQCLAACM DLSDALRSPS PYHAVSHLPI HQDGSCNGLQ HYAALGRDYM GAVAVNLVPG EKPADIYSEI ASRVLNVVCE
701: DSMKDPATNP TASLARVLVD QVSLLSHPSS VFLNSSKKYP CTHSISSNKT VEDMGIGSLQ VDRKLVKQTV MTSVYGVTYI GARQQITKRL QEKGLITDDK
801: LLYDVSCYAT RVTLDALGQM FQSARGIMAW LGDCAKMIAS KNQPVKWTSP VGLPVVQPYK KYKNYMIRTS LQCLALRREG DAIAIQRQKA AFPPNFVHSL
901: DSSHMMMTAI ACKESGLHFA GVHDSFWVHA CDVDQMNQIL RQQFVELYSM PILENLLEEF QTSFPTLEFP PCPPQGNFDV REVLTSTYFF N
001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN
Arabidopsis Description
MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.