Factsheet for Zm00001d045595_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030829_P001	Maize	mitochondrion	79.57	74.0
Zm00001d014049_P001	Maize	mitochondrion	78.49	71.57
Zm00001d035375_P002	Maize	mitochondrion, nucleus	46.77	70.16
Zm00001d034215_P001	Maize	mitochondrion	62.37	66.67
Zm00001d023696_P001	Maize	plastid	79.57	58.5
Zm00001d044404_P001	Maize	mitochondrion	38.17	58.2
VIT_01s0010g03250.t01	Wine grape	cytosol	15.59	58.0
Zm00001d043127_P001	Maize	endoplasmic reticulum	93.55	54.72
Zm00001d021198_P001	Maize	cytosol	49.46	37.7
PGSC0003DMT400028972	Potato	mitochondrion	70.43	27.81
KRH63115	Soybean	mitochondrion	72.04	24.5
CDY44514	Canola	cytosol	15.59	23.2
TraesCS7B01G411000.1	Wheat	nucleus	87.63	21.2
Os06t0652000-01	Rice	plastid	89.25	20.6
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	86.56	18.83
EER88745	Sorghum	plastid	93.55	18.14
Zm00001d046835_P002	Maize	plastid	96.24	18.06
TraesCS7A01G503900.1	Wheat	plastid	88.17	17.28
CDY34797	Canola	plastid	74.73	14.48
CDX76837	Canola	plastid	75.27	14.42
Bra039230.1-P	Field mustard	plastid	74.73	14.2
KRH03007	Soybean	plastid	72.04	14.09
CDY39695	Canola	plastid	73.66	14.08
CDY20283	Canola	plastid	73.12	13.93
AT2G24120.1	Thale cress	plastid	73.66	13.8
VIT_11s0037g00630.t01	Wine grape	plastid	72.04	13.69
KRH54896	Soybean	plastid	71.51	13.67
Solyc07g005930.2.1	Tomato	nucleus	69.89	13.1
Zm00001d022169_P001	Maize	mitochondrion	67.74	12.92
Bra032120.1-P	Field mustard	plastid	65.05	12.87
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	74.19	7.81
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	3.76	3.8
KRH72339	Soybean	cytosol, mitochondrion, nucleus	2.69	1.73
KRH63538	Soybean	cytosol, mitochondrion, nucleus	1.08	1.32
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d007570_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:A0A1D6NX96
ProteinID:AQL02701.1	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	PFAM:PF00940	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	SUPFAM:SSF56672	UniParc:UPI0008436BAA	EnsemblPlantsGene:Zm00001d045595	EnsemblPlants:Zm00001d045595_P001	EnsemblPlants:Zm00001d045595_T001
SEG:seg	:	:	:	:	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr9:+:27929973..27931359

Molecular Weight (calculated)

21199.1 Da

IEP (calculated)

7.159

GRAVY (calculated)

-0.581

Length

186 amino acids

Sequence
(BLAST)

001: MQKWKWSLKK AKKTNRELHA ERCDNELKLS VAHKMREEDG FYYPHNLDFR GRAYPMHPHL SHLGSDHCRG VLEYAEGLSL GKYGLCWLKI HLANKYGGGI
101: EKLSHEGKLA FVENQLFDIF DSAANPVDGN CWWTNVEDPF QCLAACMDLS DALRSPSPYH AVSHLPIHQD GSCNGLQHYA ALGRDY

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.