CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032120.1-P	Field mustard	plastid	95.68	99.04
CDY20283	Canola	plastid	96.92	96.62
CDY34797	Canola	plastid	90.34	91.56
CDX76837	Canola	plastid	91.06	91.25
AT2G24120.1	Thale cress	plastid	88.69	86.91
PGSC0003DMT400028972	Potato	mitochondrion	39.05	80.68
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	14.08	73.66
Zm00001d030829_P001	Maize	mitochondrion	14.59	71.0
CDY70786	Canola	cytosol, mitochondrion, nucleus	16.24	66.95
CDY44514	Canola	cytosol	8.53	66.4
Os06t0652000-01	Rice	plastid	51.9	62.66
Solyc07g005930.2.1	Tomato	nucleus	62.18	60.99
Zm00001d014049_P001	Maize	mitochondrion	12.54	59.8
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	52.11	59.3
Zm00001d034215_P001	Maize	mitochondrion	10.59	59.2
Zm00001d023696_P001	Maize	plastid	15.31	58.89
TraesCS7B01G411000.1	Wheat	nucleus	46.25	58.52
Zm00001d021198_P001	Maize	cytosol	14.39	57.38
Zm00001d044404_P001	Maize	mitochondrion	7.09	56.56
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.29	55.97
EER88745	Sorghum	plastid	54.47	55.27
TraesCS7A01G503900.1	Wheat	plastid	53.65	55.01
CDY33562	Canola	mitochondrion	53.44	54.22
CDX90977	Canola	plastid	55.91	53.86
CDX85538	Canola	plastid	55.7	53.66
CDX95968	Canola	mitochondrion	53.55	53.66
Zm00001d046835_P002	Maize	plastid	54.57	53.58
CDY04262	Canola	mitochondrion	49.33	52.4
CDX69507	Canola	mitochondrion	23.64	52.39
CDY07360	Canola	mitochondrion	47.48	52.26
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.47	50.81
CDY26454	Canola	plastid	52.21	50.65
Zm00001d026323_P001	Maize	cytosol	7.61	48.68
Zm00001d007570_P001	Maize	cytosol	7.5	48.03
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	7.3	38.59

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078HME9	UniProt:A0A078HME9	EnsemblPlants:CDY39695	ProteinID:CDY39695
ProteinID:CDY39695.1	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
EnsemblPlantsGene:GSBRNA2T00068286001	InterPro:IPR024075	InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311
SUPFAM:SSF56672	UniParc:UPI0004EF202E	SEG:seg	:	:	:

Description

BnaA04g14120DDNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078HME9]

Coordinates

chrLK032454:-:256323..261594

Molecular Weight (calculated)

110152.0 Da

IEP (calculated)

9.705

GRAVY (calculated)

-0.408

Length

973 amino acids

Sequence
(BLAST)

001: MAPSPAAASP SLSLNQTPHF HHQTPPITWL KPPPSSALFR GKTLPISAAS SSSSTSLSIT DKPTSHFHGN LIDTFESHHP TTKGATFIEE PLERNELSAR
101: RRLFTQDPPW ISALFLKGLT RTVDQTLKLE KKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRELEKEMCE KSLAPNLPYV KHMFLGWFQP LRDVIEREQR
201: LQKSKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE HEVGIHNFLK RTRKNNAGDS QEEVKDKQLL RKRVNSLIRR
301: KRIIDALKVV KSEGIKPWGR ATQAKLGSRL LELLMETAYV QPPLTQSGDS IPEVRPAFRH KFKTVTKYPG SKMVRRYGVI ECDSLLLAGL DKSAKHMLIP
401: YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISSKTAHRV FEALDTLGNT KWRVNRKILD VVERLWADGG NIAGLVNRED VPIPEKPLSE
501: DPEEIQTWKW SVRKAKKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE GRPLGKSGLY WLKIHLANLY
601: AGGVEKLSHD GRLAFVENHL DDIIDSAENA VHGKRWWLKA EDPFQCLAAC VILAQALKSP SPHSVISNLP IHQDGSCNGL QHYAALGRDS FEAAAVNLVA
701: GDKPADVYSE ISLRVHEIMK KDSSKDPESN PTAALAKILI NQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD ERMLFAAACY SAKVTLAALG
801: EIFEAARAIM SWLGDCAKII ASDNHPVRWT TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH SLDGTHMMMT AVACREAGLN
901: FAGVHDSYWT HACDVDTMNR ILREKFVELY SSPVLEDLLQ SFQESYPTLV FPPVPKRGEF DLKEVLKSQY FFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.