CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008681.1-P	Field mustard	plastid	71.98	64.36
PGSC0003DMT400003507	Potato	cytosol	27.11	46.67
CDY70786	Canola	cytosol, mitochondrion, nucleus	20.96	38.98
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	51.94	32.07
CDX85538	Canola	plastid	67.43	29.31
CDX90977	Canola	plastid	67.43	29.31
CDY26454	Canola	plastid	64.92	28.41
AT5G15700.2	Thale cress	plastid	65.83	27.5
OQU90275	Sorghum	mitochondrion	60.14	27.05
GSMUA_Achr3P28120_001	Banana	mitochondrion	59.23	27.0
Zm00001d022169_P001	Maize	mitochondrion	59.0	26.56
TraesCS5D01G171600.1	Wheat	plastid	58.54	25.6
TraesCS5B01G164300.1	Wheat	plastid	58.54	25.6
CDY33562	Canola	mitochondrion	55.13	25.23
CDX95968	Canola	mitochondrion	55.35	25.03
KRH01430	Soybean	plastid	58.31	24.47
HORVU5Hr1G051530.5	Barley	mitochondrion	58.54	24.41
CDY34797	Canola	plastid	52.85	24.17
TraesCS5A01G167300.2	Wheat	plastid	53.53	24.1
CDX76837	Canola	plastid	53.08	24.0
VIT_14s0083g00790.t01	Wine grape	cytosol	56.26	23.86
KRH45146	Soybean	mitochondrion	57.18	23.72
CDY20283	Canola	plastid	52.62	23.67
CDY39695	Canola	plastid	52.39	23.64
CDY04262	Canola	mitochondrion	49.2	23.58
Os09t0246200-01	Rice	mitochondrion	48.97	22.61
CDY07360	Canola	mitochondrion	41.69	20.7
PGSC0003DMT400003501	Potato	cytosol	30.75	20.09
CDY44514	Canola	cytosol	3.87	13.6
Solyc02g089330.2.1	Tomato	cytosol	1.14	1.59

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.20	Gene3D:1.10.287.280	MapMan:15.6.1.1	Gene3D:3.30.70.370
GO:A0A078BYQ9	EnsemblPlants:CDX69507	ProteinID:CDX69507	ProteinID:CDX69507.1	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
EnsemblPlantsGene:GSBRNA2T00135501001	PFAM:PF00940	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF0	SUPFAM:SSF56672
UniParc:UPI0004EE3436	:	:	:	:	:

Description

BnaA10g18560D

Coordinates

chrLK031790:+:537789..541469

Molecular Weight (calculated)

49618.6 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.239

Length

439 amino acids

Sequence
(BLAST)

001: MYLLINLRKK HILKQPNLQW TRLCKSPDQN SPSSNISKLN FAIILYIKCA LNNTSQRLYN LGARKRVLAG SSGPLGCESV IYMVAQKMKD GEGFYYPHNI
101: DFRGRAYPMP SHINHLGSDL CRGVLEFAEG RPLRSPGLRW LKIELANLYA GGVDKLSYEG RLAFTENHLE DIFDSADRPL EGNRWWLQAE DPFQCLAVCI
201: NLTEALRCPS PETVLSHIPI HQDGSCNGFQ HYAALGRDTV TSTAIDEMFE AARAIMRWFG ECAKIITAEN ETLEMGTQSI NTSLQTLSLQ RETDKVVVRR
301: QRTAFPPNFI HSLDGCHMMM TAVTCKRAGL CFAVVHDSFW THACDVDKLN KILREKFVEL YAQPILENLL ESFEKSFPHL DFPPLPERGD LDLKVVLDSP
401: SIDERFLQNR VSSQGLSSVL ESTLCWEALN DVALGRGDY

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.