Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G164300.1 | Wheat | plastid | 92.31 | 96.81 |
| TraesCS5D01G171600.1 | Wheat | plastid | 92.12 | 96.61 |
| TraesCS5A01G167300.2 | Wheat | plastid | 88.13 | 95.18 |
| PGSC0003DMT400003507 | Potato | cytosol | 19.94 | 82.35 |
| KRH45290 | Soybean | cytosol, mitochondrion, nucleus | 19.75 | 81.57 |
| Os09t0246200-01 | Rice | mitochondrion | 72.27 | 80.02 |
| OQU90275 | Sorghum | mitochondrion | 73.5 | 79.3 |
| Zm00001d022169_P001 | Maize | mitochondrion | 73.31 | 79.18 |
| Solyc02g089340.2.1 | Tomato | cytosol, mitochondrion, nucleus | 50.71 | 75.11 |
| CDY70786 | Canola | cytosol, mitochondrion, nucleus | 15.86 | 70.76 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 63.06 | 68.95 |
| VIT_01s0010g00690.t01 | Wine grape | mitochondrion | 64.01 | 68.92 |
| KRH07470 | Soybean | cytosol, mitochondrion, nucleus | 13.87 | 68.87 |
| Solyc05g010660.2.1 | Tomato | mitochondrion | 63.15 | 66.97 |
| PGSC0003DMT400003501 | Potato | cytosol | 41.41 | 64.88 |
| VIT_14s0083g00790.t01 | Wine grape | cytosol | 63.25 | 64.35 |
| Bra023533.1-P | Field mustard | mitochondrion | 58.97 | 63.69 |
| KRH01430 | Soybean | plastid | 62.96 | 63.38 |
| CDY33562 | Canola | mitochondrion | 56.89 | 62.46 |
| KRH07469 | Soybean | mitochondrion | 47.29 | 62.09 |
| CDX85538 | Canola | plastid | 59.16 | 61.68 |
| CDX90977 | Canola | plastid | 59.16 | 61.68 |
| CDX95968 | Canola | mitochondrion | 56.79 | 61.59 |
| KRH45146 | Soybean | mitochondrion | 61.82 | 61.53 |
| Bra004354.1-P | Field mustard | mitochondrion | 56.6 | 61.38 |
| KRH45285 | Soybean | mitochondrion | 39.89 | 60.87 |
| AT1G68990.2 | Thale cress | mitochondrion | 56.51 | 60.53 |
| Bra004010.1-P | Field mustard | plastid | 51.28 | 59.87 |
| CDY04262 | Canola | mitochondrion | 51.66 | 59.39 |
| HORVU7Hr1G112980.9 | Barley | mitochondrion, nucleus, plastid | 47.96 | 59.06 |
| CDY07360 | Canola | mitochondrion | 49.48 | 58.94 |
| CDX69507 | Canola | mitochondrion | 24.41 | 58.54 |
| CDY26454 | Canola | plastid | 55.65 | 58.42 |
| AT5G15700.2 | Thale cress | plastid | 56.89 | 56.99 |
| Bra008681.1-P | Field mustard | plastid | 25.36 | 54.38 |
| Bra027253.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 6.36 | 52.34 |
| Solyc02g089330.2.1 | Tomato | cytosol | 9.69 | 32.48 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.150.20 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 |
| MapMan:15.6.1.1 | Gene3D:3.30.70.370 | UniProt:A0A287R723 | InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | EnsemblPlantsGene:HORVU5Hr1G051530 | EnsemblPlants:HORVU5Hr1G051530.5 | InterPro:IPR024075 | InterPro:IPR037159 | PFAM:PF00940 |
| PFAM:PF14700 | ScanProsite:PS00489 | ScanProsite:PS00900 | PANTHER:PTHR10102 | PANTHER:PTHR10102:SF1 | InterPro:RNA_POL_N_sf |
| InterPro:RPOL_N | SMART:SM01311 | SUPFAM:SSF56672 | UniParc:UPI000B469F2E | SEG:seg | : |
Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A287R723]
Coordinates
chrchr5H:+:402162053..402175585
Molecular Weight (calculated)
117935.0 Da
IEP (calculated)
9.799
GRAVY (calculated)
-0.417
Length
1053 amino acids
Sequence
(BLAST)
(BLAST)
0001: PNQPRTKAHA RVLAQARSRR APLAQPPLPS CVGGGATSPI PHVFHSLPRR LQLMLTAPTP AAETAISPPS PPLPPPPVLL PTKVLALMWR RLPSRRLASA
0101: LLSASAPQLP PPPLHRLLLP APAAATGILP PARLLWGHPP SRFASSSAAA AEAVSSEEVD EPHHAPDEIV RLGPNPKPLA AAAGEAGKKE RRRGRGQGRQ
0201: LAELAAEHGI GYSKYVSLRQ RQIRIETEAW EQAAKEYREL LADMCEHKLA PNLPYVKSLF LGWFEPLRDQ IIAEQELVGE RGTRASHAPY FNMLPADMMA
0301: VITMHKLMGL LMTGSGDGSV RVIQAACQIG EAVEHEVRIH KFLEKTKKKN TKEVDKVVEP GDSDIAKEQQ LLRKKVTDLM KKQKIRQVRH LVKKQDSTRP
0401: WGQDAHAKVG SRLIELFIET AHIQPPASQS GDSTPEIRPA FTHEMRTVAR EQKSRRYGVI KCDPLVRQGL DRTAKHMVIP YMPMLIPPIN WTGYDKGAHL
0501: FLPSYVMRTH GARQQREAVK KAPKEQMQTI FEALDNLGST KWRVNKRVLS IVDRIWSSGG RLADLVDRAD VSLPEKPDTE DEAELKKWRW SMRSAKKENS
0601: ERHSQRCDVE LKLAVARKMK EEVGFYYPHN LDFRGRAYPM HPYLNHLGSD LCRGVLEFSE GRPLGESGLR WLKIHLANLY GGGVDKLSYD GRIAFTENHL
0701: EDIFDSANRP LEGKRWWLEA EDPFQCLAVC MDLNEALRSS SPETVISHIP VHQDGSCNGL QHYAALGRDK LGAVAVNLVS GEKPADVYSG IAARVVEIMK
0801: RDAQKDPAKD ADAARARLLV DQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLKERGVIAD DSELFGASCY AAKVTLTALG EMFEAARSIM NWLGDCAKVI
0901: ACENEPVRWK TPLGLPVVQP YRKLGRHLIK TSLQVLTLQR ETDKVMVKRQ RTAFPPNFVH SLDGSHMMMT AVACKKQGLY FAGVHDSYWT HACDVDTMNK
1001: ILREKFVELY DAPILENLLE SFETSFPKLK FPPLPERGNF DMKDVLQSTY FFN
0101: LLSASAPQLP PPPLHRLLLP APAAATGILP PARLLWGHPP SRFASSSAAA AEAVSSEEVD EPHHAPDEIV RLGPNPKPLA AAAGEAGKKE RRRGRGQGRQ
0201: LAELAAEHGI GYSKYVSLRQ RQIRIETEAW EQAAKEYREL LADMCEHKLA PNLPYVKSLF LGWFEPLRDQ IIAEQELVGE RGTRASHAPY FNMLPADMMA
0301: VITMHKLMGL LMTGSGDGSV RVIQAACQIG EAVEHEVRIH KFLEKTKKKN TKEVDKVVEP GDSDIAKEQQ LLRKKVTDLM KKQKIRQVRH LVKKQDSTRP
0401: WGQDAHAKVG SRLIELFIET AHIQPPASQS GDSTPEIRPA FTHEMRTVAR EQKSRRYGVI KCDPLVRQGL DRTAKHMVIP YMPMLIPPIN WTGYDKGAHL
0501: FLPSYVMRTH GARQQREAVK KAPKEQMQTI FEALDNLGST KWRVNKRVLS IVDRIWSSGG RLADLVDRAD VSLPEKPDTE DEAELKKWRW SMRSAKKENS
0601: ERHSQRCDVE LKLAVARKMK EEVGFYYPHN LDFRGRAYPM HPYLNHLGSD LCRGVLEFSE GRPLGESGLR WLKIHLANLY GGGVDKLSYD GRIAFTENHL
0701: EDIFDSANRP LEGKRWWLEA EDPFQCLAVC MDLNEALRSS SPETVISHIP VHQDGSCNGL QHYAALGRDK LGAVAVNLVS GEKPADVYSG IAARVVEIMK
0801: RDAQKDPAKD ADAARARLLV DQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLKERGVIAD DSELFGASCY AAKVTLTALG EMFEAARSIM NWLGDCAKVI
0901: ACENEPVRWK TPLGLPVVQP YRKLGRHLIK TSLQVLTLQR ETDKVMVKRQ RTAFPPNFVH SLDGSHMMMT AVACKKQGLY FAGVHDSYWT HACDVDTMNK
1001: ILREKFVELY DAPILENLLE SFETSFPKLK FPPLPERGNF DMKDVLQSTY FFN
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
Arabidopsis Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.