CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003507	Potato	cytosol	20.36	83.53
KRH45290	Soybean	cytosol, mitochondrion, nucleus	20.27	83.14
KRH45146	Soybean	mitochondrion	81.55	80.62
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	53.15	78.2
KRH07470	Soybean	cytosol, mitochondrion, nucleus	14.53	71.7
KRH63115	Soybean	mitochondrion	37.48	71.66
OQU90275	Sorghum	mitochondrion	63.96	68.55
PGSC0003DMT400003501	Potato	cytosol	43.59	67.86
VIT_14s0083g00790.t01	Wine grape	cytosol	66.54	67.25
Zm00001d022169_P001	Maize	mitochondrion	62.62	67.18
GSMUA_Achr3P28120_001	Banana	mitochondrion	61.57	66.87
TraesCS5B01G164300.1	Wheat	plastid	63.67	66.33
TraesCS5D01G171600.1	Wheat	plastid	63.58	66.24
TraesCS5A01G167300.2	Wheat	plastid	61.19	65.64
Bra023533.1-P	Field mustard	mitochondrion	60.42	64.82
Os09t0246200-01	Rice	mitochondrion	58.13	63.93
CDX85538	Canola	plastid	60.9	63.07
CDX90977	Canola	plastid	60.8	62.97
HORVU5Hr1G051530.5	Barley	mitochondrion	63.38	62.96
KRH07469	Soybean	mitochondrion	48.09	62.72
KRH63538	Soybean	cytosol, mitochondrion, nucleus	8.99	62.25
KRH45285	Soybean	mitochondrion	40.34	61.16
CDY26454	Canola	plastid	56.98	59.42
AT5G15700.2	Thale cress	plastid	59.37	59.09
CDX69507	Canola	mitochondrion	24.47	58.31
KRH72339	Soybean	cytosol, mitochondrion, nucleus	15.77	57.09
KRH03007	Soybean	plastid	50.1	55.1
KRH54896	Soybean	plastid	51.15	54.98
Bra008681.1-P	Field mustard	plastid	25.33	53.97
Solyc02g089330.2.1	Tomato	cytosol	10.04	33.44

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100777921	MapMan:15.6.1.1	Gene3D:3.30.70.370	EMBL:ACUP02011514	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	EnsemblPlantsGene:GLYMA_18G276200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075
InterPro:IPR037159	UniProt:K7MV39	EnsemblPlants:KRH01430	ProteinID:KRH01430	ProteinID:KRH01430.1	PFAM:PF00940
PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf
InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002965256	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:55832841..55845279

Molecular Weight (calculated)

118447.0 Da

IEP (calculated)

9.017

GRAVY (calculated)

-0.453

Length

1046 amino acids

Sequence
(BLAST)

0001: MFPSPNSLAK GLNSLPNPLI SQSSHSAISS NMWRHAAKHV CRGIIRQNFH PPRLLALSHG SVFSPKREVL LSSVAKLNCI ARGDFQFQFG AKGYSGVAEA
0101: VSSTDVEEDG GTAVDEIQQL LWQEMNDEVE SQLGEEEGAP IDEIQQLLLQ EMNEEEKNEL VEEEAAPVDG IQELLQGMKK EKQKKVVGYR WKNQGKGVGQ
0201: SRYQELRRRQ VKIETEMWEE AAKEYRELLM DMCEHKLAPN LPYMKSLFLG WFEPLRDAIV KEQEMYSEGK NRMAYAPYFV QLPADKMAVI AMHKLMGLLM
0301: TGNERVTIGT ARVVQAACGI GDAIENEVRI HKFLEKTKKK KGDRSNKNKA GESVADIKEE QKLRKKVIDL MKKQKLVAVR GLVKGKDDTK PWGAVIKTKV
0401: GSRLIELLLQ TAYIQPPSDQ LPDAAPDIRP AFVHSFKTVT KESIKASRRY GIIQCDPLIL KGLERTAKNM VIPYMPMLVP PVNWTGYDKG GHLFLPSYVM
0501: RTHGVRQQRE AVKRAPRKQL EPVFEALDTL GHTKWRVNKK VLSVVDRIWA SGGRIADLVD RDDVPLPDEP DTDDEAKIKK WKWKYKSLQK ENRERYSQRC
0601: DIELKLAVAR KMKDEEGFYY PHNLDFRGRA YPMHPHLNHL GSDLCRGILE FAEGRSLGKS GLRWLKIHLA NLYAGGVDKL SYEGRLAFTE NHFEDIFDSA
0701: DKPLEGRRWW LKAEDPLQCL AVCITLTEAL RSSSPETFIS HIPVHQDGSC NGLQHYAALG RDKLGAAAVN LVTGEKPADV YSGIAARVSN IMQRDAQKDP
0801: AVFRDALHAR TLVNQVDRKL VKQTVMTSVY GVTYIGAREQ IKRRLKERNA ISDDKELFGA SCYAAKVTLT ALEEMFQGAR GIMSWLGDCA KVIASENQPV
0901: RWTTPLGLPV VQPYRKLGKH IIKTSLQILT LQRETDKVMV TRQRTAFPPN FVHSLDGSHM MMTAVACKKE GLSFAGVHDS YWTHACDVDK MNRILREKFV
1001: ELYETPVLEN LLESFQSSFP SLSFPSLPER GDFDLKEVLE SPYFFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.