CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63538	Soybean	cytosol, mitochondrion, nucleus	38.75	74.17
KRH45290	Soybean	cytosol, mitochondrion, nucleus	50.17	56.86
PGSC0003DMT400028972	Potato	mitochondrion	63.32	38.85
KRH07470	Soybean	cytosol, mitochondrion, nucleus	26.3	35.85
KRH63115	Soybean	mitochondrion	65.4	34.55
GSMUA_Achr1P09550_001	Banana	mitochondrion	32.18	25.2
KRH03007	Soybean	plastid	74.39	22.61
KRH54896	Soybean	plastid	66.44	19.73
Os06t0652000-01	Rice	plastid	51.9	18.61
Solyc07g005930.2.1	Tomato	nucleus	62.98	18.35
Bra032120.1-P	Field mustard	plastid	58.48	17.98
Bra039230.1-P	Field mustard	plastid	58.48	17.26
AT2G24120.1	Thale cress	plastid	59.17	17.22
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	50.52	17.08
TraesCS7B01G411000.1	Wheat	nucleus	44.29	16.64
KRH01430	Soybean	plastid	57.09	15.77
KRH45146	Soybean	mitochondrion	56.75	15.5
EER88745	Sorghum	plastid	50.87	15.33
TraesCS7A01G503900.1	Wheat	plastid	49.83	15.17
Zm00001d046835_P002	Maize	plastid	51.21	14.93
KRH07469	Soybean	mitochondrion	29.41	10.6
VIT_01s0010g03250.t01	Wine grape	cytosol	1.73	10.0
Zm00001d043127_P001	Maize	endoplasmic reticulum	5.88	5.35
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	1.73	2.69
Zm00001d030829_P001	Maize	mitochondrion	1.73	2.5
Zm00001d035375_P002	Maize	mitochondrion, nucleus	1.04	2.42
KRH45285	Soybean	mitochondrion	5.54	2.32
Zm00001d023696_P001	Maize	plastid	1.73	1.98
Zm00001d014049_P001	Maize	mitochondrion	1.38	1.96
Zm00001d044404_P001	Maize	mitochondrion	0.69	1.64
Zm00001d034215_P001	Maize	mitochondrion	0.69	1.15
Zm00001d021198_P001	Maize	cytosol	0.69	0.82
CDY44514	Canola	cytosol	0.35	0.8
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	0.0	0.0
Zm00001d007570_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.20	MapMan:15.6.1.1	EMBL:ACUP02001203	InterPro:DNA-dir_Rpol_phage-type
EnsemblPlantsGene:GLYMA_02G206400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0034245	UniProt:K7K9S6	EnsemblPlants:KRH72339	ProteinID:KRH72339
ProteinID:KRH72339.1	PFAM:PF00940	ScanProsite:PS00489	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672
UniParc:UPI000294A4FB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:39140836..39144260

Molecular Weight (calculated)

32007.3 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.242

Length

289 amino acids

Sequence
(BLAST)

001: MHSDRQTDAT CLQSSNEKGR LEAATVNLAT SEKPTDVYSE AAADCNKDPA AYPNALLAKA LIDQIDRKLV KQTVMTSVYG VTYVEAREQI KRKLEEKGLI
101: TDEKPLFAAA CYAAKVTLTA LGEIFGAARV IMGWLGDCAK VIVSENMPVC WTTPLGLPAV QPYCKTERHL TMCSSASQST GQIFQSTSFK QHRFVDAKKQ
201: RSAFPPNFVH SLDGSHMMMT VLACRDAGLC FAGFKTSFYY QNPKAYSKFP SKLLEGFETS YPGLAFPPLP ERRGDFDLQK VLESPYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.