Factsheet for HORVU7Hr1G112980.9

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0652000-01	Rice	plastid	84.56	89.7
TraesCS7B01G411000.1	Wheat	nucleus	79.77	88.69
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	18.83	86.56
Zm00001d030829_P001	Maize	mitochondrion	20.12	86.0
TraesCS7A01G503900.1	Wheat	plastid	93.33	84.09
Zm00001d026323_P001	Maize	cytosol	14.85	83.55
Zm00001d007570_P001	Maize	cytosol	14.85	83.55
Zm00001d021198_P001	Maize	cytosol	22.92	80.33
EER88745	Sorghum	plastid	86.67	77.27
Zm00001d046835_P002	Maize	plastid	86.9	74.97
Zm00001d014049_P001	Maize	mitochondrion	17.08	71.57
PGSC0003DMT400028972	Potato	mitochondrion	39.42	71.55
Zm00001d023696_P001	Maize	plastid	20.94	70.75
Zm00001d034215_P001	Maize	mitochondrion	14.15	69.54
KRH63115	Soybean	mitochondrion	44.33	69.29
Zm00001d043127_P001	Maize	endoplasmic reticulum	25.38	68.24
Zm00001d044404_P001	Maize	mitochondrion	9.47	66.39
VIT_01s0010g03250.t01	Wine grape	cytosol	3.86	66.0
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	13.57	63.04
Zm00001d035375_P002	Maize	mitochondrion, nucleus	9.01	62.1
KRH63538	Soybean	cytosol, mitochondrion, nucleus	10.53	59.6
VIT_11s0037g00630.t01	Wine grape	plastid	62.81	54.85
KRH03007	Soybean	plastid	58.95	53.0
CDY34797	Canola	plastid	59.3	52.81
CDX76837	Canola	plastid	59.3	52.21
CDY39695	Canola	plastid	59.3	52.11
CDY20283	Canola	plastid	59.3	51.95
Bra039230.1-P	Field mustard	plastid	59.3	51.79
KRH54896	Soybean	plastid	58.71	51.59
Solyc07g005930.2.1	Tomato	nucleus	59.77	51.51
Bra032120.1-P	Field mustard	plastid	56.14	51.06
AT2G24120.1	Thale cress	plastid	59.18	50.96
KRH72339	Soybean	cytosol, mitochondrion, nucleus	17.08	50.52
CDY44514	Canola	cytosol	7.13	48.8
HORVU5Hr1G051530.5	Barley	mitochondrion	59.06	47.96
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	65.96	31.92

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:A0A287XUE4	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:HORVU7Hr1G112980	EnsemblPlants:HORVU7Hr1G112980.9	InterPro:IPR024075	InterPro:IPR037159
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI000B484201	SEG:seg

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A287XUE4]

Coordinates

chrchr7H:-:636273118..636281834

Molecular Weight (calculated)

97382.5 Da

IEP (calculated)

9.371

GRAVY (calculated)

-0.464

Length

855 amino acids

Sequence
(BLAST)

001: RHCTKTSVES RSSSPNHRRL RQRQVKAETE AWARAAEEYR QLEREMLDRN LAPQLPYVKS LFLGWFEPLR DAVARDQDVQ RRKRVKHVYA KYLLLLPPEK
101: VAVIVMHKMM GLLMSSKDGC GSVRVVQAAH SIGEAVEREY KVQAFFQKTR RKTRSKNESE NDPALDKEQA KCRKLVKSLV RRRKLTEAQK LVQQEIELEE
201: WGAEAQVKLG TRLIELLLDS AFVQSPANQT PDNSPDFRPA FKHVLRKPIV ENGRLKKKHF VIECDPLVHE GFESTARHVE IPYLPMLVPP TKWKGYDKGG
301: HLFLPSYVMR THGVKDQKEA IKSVPRKQLR KVFEALDILG GTKWRVNRRV HDVVETIWSR GGGIAGLVDK ENIPLPERPE TEDPDEIQKW RWSVKKTKKT
401: NRELHAERCD TELKLSVARK MREEDGFYYP HNLDFRGRAY PMHPHLSHLG SDLCRGVLEY GEGRPLGKSG LRWLKIHLAN KYGGGIEKLT HESKLAFVED
501: RLPAIFDSAA NPVDGNCWWI NAEDPFQCLA ACIDLSDALK SSSPHAAVSH LPIHQDGSCN GLQHYAALGR DYMGAAAVNL VPGEKPADIY SEIAARVLNV
601: VREDSMKDPA TDPSVPLARV LVDQVDRKLV KQTVMTSVYG VTFIGARQQI MKRLQEKGHI TDEKLLYDVS CYAARVTLDA LGQMFQSARG IMAWLGDCAK
701: MIASKNQPVR WTSPVGLPVV QPYKKYKNYM IRTSLQCLAL RREGDAIATQ RQKAAFPPNF VHSLDSSHMM MTAITCKEAG LHFAGVHDSF WVHACDVDKM
801: NQILREQFVE LYSMPILENL LEEFQTLFPT VEFPPCPAQG NFDVREVLTS TYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.