Factsheet for TraesCS7B01G411000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	21.2	87.63
Zm00001d030829_P001	Maize	mitochondrion	22.63	87.0
Os06t0652000-01	Rice	plastid	83.62	79.78
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	88.69	79.77
TraesCS7A01G503900.1	Wheat	plastid	92.59	75.03
Zm00001d023696_P001	Maize	plastid	23.54	71.54
Zm00001d014049_P001	Maize	mitochondrion	18.34	69.12
PGSC0003DMT400028972	Potato	mitochondrion	41.74	68.15
Zm00001d043127_P001	Maize	endoplasmic reticulum	28.09	67.92
EER88745	Sorghum	plastid	83.48	66.94
KRH63115	Soybean	mitochondrion	47.59	66.91
Zm00001d021198_P001	Maize	cytosol	21.2	66.8
Zm00001d034215_P001	Maize	mitochondrion	15.08	66.67
Zm00001d046835_P002	Maize	plastid	83.75	64.98
Zm00001d026323_P001	Maize	cytosol	12.35	62.5
Zm00001d035375_P002	Maize	mitochondrion, nucleus	10.01	62.1
VIT_01s0010g03250.t01	Wine grape	cytosol	4.03	62.0
Zm00001d007570_P001	Maize	cytosol	12.22	61.84
Zm00001d044404_P001	Maize	mitochondrion	9.75	61.48
KRH63538	Soybean	cytosol, mitochondrion, nucleus	11.44	58.28
VIT_11s0037g00630.t01	Wine grape	plastid	62.68	49.23
KRH03007	Soybean	plastid	59.17	47.84
KRH54896	Soybean	plastid	60.34	47.69
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	11.31	47.28
CDY44514	Canola	cytosol	7.67	47.2
Solyc07g005930.2.1	Tomato	nucleus	60.6	46.98
CDY34797	Canola	plastid	58.26	46.67
CDX76837	Canola	plastid	58.52	46.34
CDY39695	Canola	plastid	58.52	46.25
CDY20283	Canola	plastid	58.52	46.11
Bra039230.1-P	Field mustard	plastid	58.26	45.76
AT2G24120.1	Thale cress	plastid	58.26	45.12
Bra032120.1-P	Field mustard	plastid	55.01	45.0
KRH72339	Soybean	cytosol, mitochondrion, nucleus	16.64	44.29
TraesCS5B01G164300.1	Wheat	plastid	57.48	44.02
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	64.76	28.18

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR024075
InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	EnsemblPlantsGene:TraesCS7B01G411000
EnsemblPlants:TraesCS7B01G411000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:679794743..679802309

Molecular Weight (calculated)

87242.9 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.365

Length

769 amino acids

Sequence
(BLAST)

001: MLDRHLAPQL PYVKSLFLGW FEPLRDAVAR DQDVQRRKRV KHVYAKYLLL LPAEKVAVIV MHKMMGLLMS SKDGCGSVRV VQAAHSIGEA VEREYKVQAF
101: FQKTRRKTRS KTESENDPAL DKEQAKCRKL VKSLVRRRKL TEAQKLVQQE IELEEWGTEA QVKVCFPDSI PTITEFCLIC YGRRLKKKHF VIECDPLVHE
201: GFESTARHVE IPYLPMLVPP TKWKGYDKGG HLFLPSYVMR THGVKDQKEA IKSVPRKQLR KVFEALDILG GTKWRVNRRV HDVVETIWSR GGGIAGLVDK
301: GNIPLPEQPE TEDPDEIQKW KWSVKKTKKA NRELHAERCD TELKLSVARK MREEDGFYYP HNLDFRGRAY PMHPHLSHLG SDLCRGVLEY AEGRPLGKSG
401: LRWLKIHLAN KYGGGIEKLS HESKLAFVED HLPDIFDSAS NPVDGNCWWI NAEDPFQCLA ACMDLSKALE SSSPHGAVSH LPIHQDGSCN GLQHYAALGR
501: DYMGAAAVNL VPGEKPADIY SEIAARVLDV VREDSMKDPA TDPSVPLAKV LVDEVDRKLV KQTVMTSVYG VTFIGARQQI MKRLQEKGHI TDDKLLYDVS
601: CYATRRQGHA VTVVSLMKVT LDALGQMFQS ARAIMAWLGD CAKMIASKNQ PVRWTSPVGL PVVQPYKKYK NYMIRTSLQC LALRREGDAI ATQRQKAAFP
701: PNFVHSLDSS HMMMTAITCK EAGLHFAGVH DSFWVHACDV DKMNQILREQ FVELYSMPIL ENLHQQIIL

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.