CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028972	Potato	mitochondrion	70.38	81.74
KRH45290	Soybean	cytosol, mitochondrion, nucleus	33.82	72.55
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	24.5	72.04
Zm00001d030829_P001	Maize	mitochondrion	25.96	71.0
KRH63538	Soybean	cytosol, mitochondrion, nucleus	19.38	70.2
KRH72339	Soybean	cytosol, mitochondrion, nucleus	34.55	65.4
KRH07470	Soybean	cytosol, mitochondrion, nucleus	22.67	58.49
Zm00001d023696_P001	Maize	plastid	26.33	56.92
Zm00001d014049_P001	Maize	mitochondrion	21.02	56.37
KRH54896	Soybean	plastid	97.44	54.78
Zm00001d043127_P001	Maize	endoplasmic reticulum	31.81	54.72
Zm00001d034215_P001	Maize	mitochondrion	17.0	53.45
Zm00001d044404_P001	Maize	mitochondrion	11.52	51.64
KRH03007	Soybean	plastid	85.56	49.21
Zm00001d035375_P002	Maize	mitochondrion, nucleus	11.15	49.19
TraesCS7B01G411000.1	Wheat	nucleus	66.91	47.59
Os06t0652000-01	Rice	plastid	69.65	47.27
CDY44514	Canola	cytosol	10.42	45.6
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	69.29	44.33
Solyc07g005930.2.1	Tomato	nucleus	78.25	43.15
Bra039230.1-P	Field mustard	plastid	74.77	41.78
AT2G24120.1	Thale cress	plastid	75.14	41.39
Bra032120.1-P	Field mustard	plastid	69.84	40.64
TraesCS7A01G503900.1	Wheat	plastid	69.84	40.25
EER88745	Sorghum	plastid	68.92	39.31
Zm00001d021198_P001	Maize	cytosol	17.37	38.93
Zm00001d046835_P002	Maize	plastid	69.47	38.35
KRH01430	Soybean	plastid	71.66	37.48
KRH45146	Soybean	mitochondrion	71.85	37.15
KRH07469	Soybean	mitochondrion	50.64	34.54
GSMUA_Achr1P09550_001	Banana	mitochondrion	22.85	33.88
KRH45285	Soybean	mitochondrion	36.38	28.84
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	4.75	14.13
Zm00001d007570_P001	Maize	cytosol	2.38	8.55
Zm00001d026323_P001	Maize	cytosol	2.38	8.55

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280	MapMan:15.6.1.1
Gene3D:3.30.70.370	EMBL:ACUP02002610	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	EnsemblPlantsGene:GLYMA_04G155600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0034245	UniProt:I1JWD0	InterPro:IPR024075	EnsemblPlants:KRH63115	ProteinID:KRH63115
ProteinID:KRH63115.1	PFAM:PF00940	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
SUPFAM:SSF56672	UniParc:UPI00023BF556	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:36408753..36424092

Molecular Weight (calculated)

61570.3 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.305

Length

547 amino acids

Sequence
(BLAST)

001: MRTHGSRKQQ DVMKNVNGAQ MQKVFETLDI LGNTKWRVNR RMLGVVESIW AGGGNIAGLV DCKDVPKPDK PPVEDLKLIQ EWKCSVRKAK KINLERHSLR
101: CDTELKLSVA RKMKDEEGFY YPHNLDFRGR AYPMHPHLNH LGSDLCRGLL EFAEGRPLGK SGLRWLKIHL ANLYAGGIEK HSYDGRLGFI EDHIHDIFDS
201: ADHPINGNRW WLTAEDPFQC LAACINLSEA LRSSSPNSFI SHLPIHQDGS CNGLQHYAAL GRDNLEAAAV NLVAKEKPAD VYTEIAVRVY DIMRRDSNKD
301: PDTFPNALLA KVLLGQIDRK LVKQTVMTSV YGVTYIGARE QIKRRLGEKG LITDDRLLYA ASCYAAKVTL AALGEVFEAA RGIMGWLGDC AKVIACENQA
401: VRWTTPLGLP VVQPYCKTER YQIRTSLQLL ALQREGSAVS VKKQRSAFPP NFVHSLDSSH MMMTALACND AGLCFAGVHD SFWTHPCDVE KMNQILREKF
501: VELYNMPILE NLLEGFQTTY PGLAFPPLPK RGDFDLQKVL DSPYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.