CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63115	Soybean	mitochondrion	49.21	85.56
KRH63538	Soybean	cytosol, mitochondrion, nucleus	13.25	83.44
PGSC0003DMT400028972	Potato	mitochondrion	40.48	81.74
KRH72339	Soybean	cytosol, mitochondrion, nucleus	22.61	74.39
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	14.09	72.04
KRH45290	Soybean	cytosol, mitochondrion, nucleus	19.24	71.76
Zm00001d030829_P001	Maize	mitochondrion	14.72	70.0
KRH54896	Soybean	plastid	71.4	69.78
VIT_01s0010g03250.t01	Wine grape	cytosol	3.58	68.0
Solyc07g005930.2.1	Tomato	nucleus	66.56	63.81
KRH07470	Soybean	cytosol, mitochondrion, nucleus	13.88	62.26
Os06t0652000-01	Rice	plastid	52.26	61.66
Bra032120.1-P	Field mustard	plastid	58.89	59.57
Bra039230.1-P	Field mustard	plastid	61.3	59.55
Zm00001d023696_P001	Maize	plastid	15.77	59.29
TraesCS7B01G411000.1	Wheat	nucleus	47.84	59.17
AT2G24120.1	Thale cress	plastid	61.72	59.11
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	53.0	58.95
Zm00001d014049_P001	Maize	mitochondrion	12.62	58.82
Zm00001d021198_P001	Maize	cytosol	14.62	56.97
Zm00001d034215_P001	Maize	mitochondrion	10.41	56.9
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.51	55.35
CDY44514	Canola	cytosol	7.15	54.4
TraesCS7A01G503900.1	Wheat	plastid	53.1	53.21
Zm00001d026323_P001	Maize	cytosol	8.41	52.63
EER88745	Sorghum	plastid	52.89	52.45
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.83	52.42
Zm00001d046835_P002	Maize	plastid	53.63	51.46
Zm00001d007570_P001	Maize	cytosol	8.2	51.32
Zm00001d044404_P001	Maize	mitochondrion	6.52	50.82
KRH01430	Soybean	plastid	55.1	50.1
KRH07469	Soybean	mitochondrion	42.17	50.0
KRH45146	Soybean	mitochondrion	55.2	49.62
KRH45285	Soybean	mitochondrion	34.49	47.54
GSMUA_Achr1P09550_001	Banana	mitochondrion	13.99	36.04
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	6.83	35.33

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100779299	MapMan:15.6.1.1	Gene3D:3.30.70.370	EMBL:ACUP02010333	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	EnsemblPlantsGene:GLYMA_17G071600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0034245	UniProt:I1MT00
InterPro:IPR024075	InterPro:IPR037159	EnsemblPlants:KRH03007	ProteinID:KRH03007	ProteinID:KRH03007.1	PFAM:PF00940
PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf
InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI000233EDA4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:5597098..5608223

Molecular Weight (calculated)

108112.0 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.355

Length

951 amino acids

Sequence
(BLAST)

001: MAFATSFSTP HLQRGIHPTK SQSLHHFLFF PNPIFCCFPS SIPLTIKTPR TQFHLSASVH DNCVQKLENL HEPVNGVHQT EPPDPPQRIF IQNSPWILND
101: LLLNDIEEEK KLNLLRRRQI KAETEALEKM VEEYRELERE MREKNLTPNL PHVKALFLGW FDPLKEAIEA EQKSKRSKKH KAAFAPHIDS LPAAKLAVIV
201: MHKVMGLVTQ EYRRAGCVLL VDAAVQIGMA VEQEVRIHKF LEKTRSHQSK KTEAGDEDSM DNDKQKLRKH VNGLIKRRRL KQVQMLLKEK ESGPWGRDTQ
301: AKLGSRLIEL LIETAFVHSP VNQSADTPPD IRPAFRHKFK AISKNPEQKI LKNYGVIECD PLVLAGMDKS VKHMLMPYMP MLVPPKKWKG YEKGGHLFLP
401: SYIMRTHGSK KQQDVMKNVE RKQMQKVFEA LDTLGNTKWR VNRRLLNVVE SLWAGGGNIA GLIDRKDVPI PERPPLGDLK QIQEWKWSVR KAEKINLERH
501: SLRCDTELKL SVAQKMKDEE GFYYPHNVDF RGRAYPMHSH LNHLSCDLCR GLLEFAEGRP LGESGLCWLK IHLANLYAGG IEKLSYDGRL AFVENHLHDI
601: FDSADNPING NRWWLMADDP FQCLAACINL SEALRSSSPN SVILHLPIHQ DGSCNGLQHY AALGRDSLEA AAVNLVASEK PADVYSEIAV RVHDIMRKDC
701: IKDPAAYPNA LLAKVLIDQI DRKLVKQTVM TSVYGVTFVG AREQIKRRLE EKGLITDEKL LFAAACYAAK VTLTALGEIF GAARVIMGWL GDCAKVIAFE
801: NQPVRWTTPL GLPVVQPYCK TERHLIKTSL QFLALRREGN AVDAKKQRSA FPPNFVHSLD GSHMMMTALA CRDAGLCFAG VHDSFWTHAC DVEKMSQILR
901: EKFVELYSMP ILENLLEGFE TSYPGLTFPP LPERRGDFDL QKVLESPYFF N

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.