Factsheet for Zm00001d035375_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	70.16	46.77
Zm00001d014049_P001	Maize	mitochondrion	75.81	46.08
Zm00001d030829_P001	Maize	mitochondrion	62.1	38.5
Zm00001d034215_P001	Maize	mitochondrion	52.42	37.36
Zm00001d023696_P001	Maize	plastid	62.1	30.43
Zm00001d043127_P001	Maize	endoplasmic reticulum	70.97	27.67
VIT_01s0010g03250.t01	Wine grape	cytosol	9.68	24.0
Zm00001d044404_P001	Maize	mitochondrion	16.13	16.39
PGSC0003DMT400028972	Potato	mitochondrion	48.39	12.74
KRH63115	Soybean	mitochondrion	49.19	11.15
Zm00001d021198_P001	Maize	cytosol	21.77	11.07
TraesCS7B01G411000.1	Wheat	nucleus	62.1	10.01
Os06t0652000-01	Rice	plastid	64.52	9.93
Zm00001d046835_P002	Maize	plastid	72.58	9.08
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	62.1	9.01
EER88745	Sorghum	plastid	68.55	8.86
TraesCS7A01G503900.1	Wheat	plastid	62.9	8.22
CDY44514	Canola	cytosol	7.26	7.2
CDX76837	Canola	plastid	54.84	7.0
CDY34797	Canola	plastid	54.03	6.98
Bra039230.1-P	Field mustard	plastid	54.03	6.84
KRH03007	Soybean	plastid	52.42	6.83
Bra032120.1-P	Field mustard	plastid	50.81	6.7
AT2G24120.1	Thale cress	plastid	52.42	6.55
VIT_11s0037g00630.t01	Wine grape	plastid	51.61	6.54
CDY39695	Canola	plastid	50.81	6.47
CDY20283	Canola	plastid	50.0	6.35
KRH54896	Soybean	plastid	49.19	6.27
Solyc07g005930.2.1	Tomato	nucleus	47.58	5.95
Zm00001d022169_P001	Maize	mitochondrion	45.16	5.74
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	52.42	3.68
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	1.61	1.09
KRH72339	Soybean	cytosol, mitochondrion, nucleus	2.42	1.04
Zm00001d007570_P001	Maize	cytosol	0.81	0.66
Zm00001d026323_P001	Maize	cytosol	0.81	0.66
KRH63538	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	UniProt:A0A1D6LG76	ProteinID:AQK78920.1
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	PFAM:PF00940	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672
UniParc:UPI000844949A	EnsemblPlantsGene:Zm00001d035375	EnsemblPlants:Zm00001d035375_P002	EnsemblPlants:Zm00001d035375_T002	:	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr6:+:23621898..23622998

Molecular Weight (calculated)

13877.5 Da

IEP (calculated)

7.982

GRAVY (calculated)

-0.362

Length

124 amino acids

Sequence
(BLAST)

001: MKCRNGSTSI KKAKKTNREL HVRDVTLSSN SRAATRKVWV VLVEDTLANK YGGGIEKLSH EGKLAFVENQ LFDIFDSAAN PIDGNYWWTN AEDPFQCLAA
101: CMDLSDALRS PSPYHAVCHL LIHQ

Best Arabidopsis Sequence Match ( AT2G24120.2 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVKPICL FLCFH

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.