CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39695	Canola	plastid	96.62	96.92
CDY34797	Canola	plastid	89.75	91.25
CDX76837	Canola	plastid	90.57	91.04
AT2G24120.1	Thale cress	plastid	88.01	86.51
PGSC0003DMT400028972	Potato	mitochondrion	39.04	80.89
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	13.93	73.12
Zm00001d030829_P001	Maize	mitochondrion	14.45	70.5
CDY70786	Canola	cytosol, mitochondrion, nucleus	16.19	66.95
CDY44514	Canola	cytosol	8.5	66.4
Os06t0652000-01	Rice	plastid	51.64	62.53
Solyc07g005930.2.1	Tomato	nucleus	61.89	60.89
Zm00001d014049_P001	Maize	mitochondrion	12.4	59.31
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	51.95	59.3
Zm00001d023696_P001	Maize	plastid	15.27	58.89
Zm00001d034215_P001	Maize	mitochondrion	10.45	58.62
TraesCS7B01G411000.1	Wheat	nucleus	46.11	58.52
Zm00001d021198_P001	Maize	cytosol	14.24	56.97
Zm00001d044404_P001	Maize	mitochondrion	7.07	56.56
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.24	55.97
TraesCS7A01G503900.1	Wheat	plastid	53.38	54.9
EER88745	Sorghum	plastid	53.89	54.85
CDY33562	Canola	mitochondrion	53.38	54.33
CDX90977	Canola	plastid	55.94	54.06
CDX85538	Canola	plastid	55.64	53.76
CDX95968	Canola	mitochondrion	53.38	53.66
Zm00001d046835_P002	Maize	plastid	54.1	53.28
CDX69507	Canola	mitochondrion	23.67	52.62
CDY07360	Canola	mitochondrion	47.54	52.49
CDY04262	Canola	mitochondrion	49.18	52.4
CDY26454	Canola	plastid	52.05	50.65
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.35	50.0
Zm00001d026323_P001	Maize	cytosol	7.68	49.34
Zm00001d007570_P001	Maize	cytosol	7.58	48.68
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	7.27	38.59

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	GO:A0A078G6J8	UniProt:A0A078G6J8	EnsemblPlants:CDY20283	ProteinID:CDY20283
ProteinID:CDY20283.1	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
EnsemblPlantsGene:GSBRNA2T00012195001	InterPro:IPR024075	InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311
SUPFAM:SSF56672	UniParc:UPI0004EAD2FB	SEG:seg	:	:	:

Description

BnaC04g36730DDNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078G6J8]

Coordinates

chrLK032105:-:229349..234634

Molecular Weight (calculated)

110582.0 Da

IEP (calculated)

9.740

GRAVY (calculated)

-0.407

Length

976 amino acids

Sequence
(BLAST)

001: MAPSPAAASP SLSLHQTPHF HHQTSLITWL KPPPPPPSSA LFRRKTLPIS AASSSSSTSL SITDKPTSHF HGNLIDTFES HDPTTKGATL IEESDERNEL
101: SARRRLFTQD PPWISALFLK GLTRTVDQTL KLEKKDIDKR KFDSLRRRQV KEETEAWERM VDEYRELEKE MCEKSLAPNL PYVKHMFLGW FQPLKDVIER
201: EQRLQKNKSK KVRAAYAPHI ELLPADKMAV IVMHKMMGLV MSGHEDGCIQ VVQAAVSIGI AIEHEVRIHN FLKRTRKNNA GDSQEELKDK QLLRKRVNSL
301: IRRKRIIDAL KVVKSDGIKP WGRATQAKLG SRLLELLMET AYVQPPLTQS GDSIPEVRPA FRHKFKTVTK YPGSKLVRRY GVIECDSLLL AGLDKSAKHM
401: LIPYVPMLVP PKRWKGYDKG GYLFLPSYIM RTHGSKKQQD ALKDISSKTA HRVFEALDTL GNTKWRVNRK ILDVVERLWA DGGNIAGLVN REDVPIPGKP
501: LSEDPEEIQL WKWSVRKAKK INRERHSLRC DVELKLSVAR KMKDEEGFYY PHNLDFRGRA YPMHPHLNHL SSDLCRGTLE FAEGRPLGKS GLYWLKIHLA
601: NLYAGGVEKL SHDGRLAFVE NHLDDIIESA ENAVHGKRWW LKAEDPFQCL AACVILAQAL KSPSPHSVIS NLPIHQDGSC NGLQHYAALG RDSFEAAAVN
701: LVAGEKPADV YSEISLRVHE IMKKDSSKDP ESNPTAALAK ILINQVDRKL VKQTVMTSVY GVTYVGAREQ IKRRLEEKGV ITDERMLFAA ACYSAKVTLA
801: ALGEIFEAAR AIMSWLGDCA KIIALDNHPV RWTTPLGLPV VQPYCRSERH LIRTSLQVLA LQREGNTVDV RKQRTAFPPN FVHSLDGTHM MMTAVACREA
901: GLNFAGVHDS YWTHACDVDT MNRILREKFV ELYSSPILED LLQSFQESYP TLVFPPVPKR GDFDLKEVLK SQYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.