CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004010.1-P	Field mustard	plastid	86.2	84.48
CDY04262	Canola	mitochondrion	85.07	82.1
CDY70786	Canola	cytosol, mitochondrion, nucleus	20.48	76.69
CDY33562	Canola	mitochondrion	79.64	73.41
CDX95968	Canola	mitochondrion	79.98	72.81
KRH45290	Soybean	cytosol, mitochondrion, nucleus	19.12	66.27
AT1G68990.2	Thale cress	mitochondrion	72.17	64.9
KRH07470	Soybean	cytosol, mitochondrion, nucleus	13.69	57.08
VIT_01s0010g00690.t01	Wine grape	mitochondrion	61.65	55.73
Solyc05g010660.2.1	Tomato	mitochondrion	61.31	54.58
GSMUA_Achr3P28120_001	Banana	mitochondrion	59.28	54.41
OQU90275	Sorghum	mitochondrion	58.6	53.07
Zm00001d022169_P001	Maize	mitochondrion	58.26	52.82
KRH07469	Soybean	mitochondrion	47.51	52.37
KRH45285	Soybean	mitochondrion	40.61	52.03
TraesCS5B01G164300.1	Wheat	plastid	58.94	51.89
TraesCS5D01G171600.1	Wheat	plastid	58.94	51.89
TraesCS5A01G167300.2	Wheat	plastid	56.79	51.49
CDX90977	Canola	plastid	58.03	50.79
CDX85538	Canola	plastid	57.81	50.59
Os09t0246200-01	Rice	mitochondrion	54.3	50.47
HORVU5Hr1G051530.5	Barley	mitochondrion	58.94	49.48
CDY26454	Canola	plastid	55.77	49.15
CDY34797	Canola	plastid	52.6	48.44
CDX76837	Canola	plastid	52.49	47.79
CDY20283	Canola	plastid	52.49	47.54
CDY39695	Canola	plastid	52.26	47.48
CDY44514	Canola	cytosol	6.45	45.6
CDX69507	Canola	mitochondrion	20.7	41.69

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	MapMan:15.6.1.1
GO:A0A078EZ35	UniProt:A0A078EZ35	EnsemblPlants:CDY07360	ProteinID:CDY07360	ProteinID:CDY07360.1	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:GSBRNA2T00124322001	InterPro:IPR024075	InterPro:IPR037159
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0004EDDD2C	SEG:seg

Description

BnaA07g24390DDNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078EZ35]

Coordinates

chrLK031978:+:176872..181179

Molecular Weight (calculated)

99605.0 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.431

Length

884 amino acids

Sequence
(BLAST)

001: MWRNIFGRAT SRKFKPFSGS PSGNKIHSIL SSIELVGSLQ NRPPTNPFHQ LGRASSVLHG QRFAFATATQ AIEDDSSSGS EEVNELMTET GTGAQKKYHS
101: LKQRQVRLET EEWERAAREC REIIEDMCEQ KLAPNLPYVK SLFLGWFEPL RDAIRADLDA FKVKRGKIPY APYMELLPAD MMAVITMHKM MALLMTNAEG
201: VGVVRVVNAV TNVGEAIEQE ARISSFMQKG KRKNEAVDAS GETGTKEAVK LKKQINTLLK KHKVRRVSGI VKAHDSFKPW GQEAQVKVGA RLIQLLLETA
301: YIQPSAEQFD DGPPEIRPAF KQSSKNVTLE NTKLSRRYGC IECDPLIRKG LDKSARHMVI PYLPMLIPPR NWTGYDQGAH FFLPSYLMRT NGSKQQRIAV
401: NKTPKAQLEP VFKALDTLGN TKWRINKKVL SLVDRIWANG GRLGGLVDRD DVPIPEEPDG EDQEELKQWK WKFKEANKEN SERHSQRCDV ELKLEVARKM
501: KEEEGFYFPH NVDFRGRAYP MHPYLNHLGS DLCRGILEFC EGKPLGESGL RWLKVHIANL YAGGCLAACM NLSKALRSSV PEAAISHIPI HQDGSCNGLQ
601: HYAALGRDKT GAAAVNLFTG EKPADIYADI AARVLKIMQK DAEEDPETFP YAKLMLDQVD RKLVKQTVMT TVYGVTYSGA RNQIKKRLKE RGAFADDSQN
701: FHAAYYAARV TTNALEEMFG AARAIMIWFG ECAKIIASQN KPVCWTTPLG LPVVQPYRQP GRHLVKTTLQ VLTIKRDTEK VKARKQMTAF APNFVHSLDA
801: SHMMMTAVAC NRAGLSFAGV HDSFWTHASD VDVMNRILRE SLLSSTTSHC WSFQKSFPSL RFPPLPERGD FDLREVIRSP YFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.