Factsheet for Os09t0246200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 15509842
mitochondrion: 23257241
plastid: 23257241

gfp PMID: 15509842 doi

K Kusumi, A Yara, N Mitsui, Y Tozawa, K Iba

Department of Biology, Faculty of Science, Kyushu University, Hakozaki, Higashi-ku, Fukuoka, 812-81 Japan.

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G167300.2	Wheat	plastid	79.5	77.54
TraesCS5B01G164300.1	Wheat	plastid	79.81	75.6
TraesCS5D01G171600.1	Wheat	plastid	79.71	75.5
Zm00001d022169_P001	Maize	mitochondrion	77.29	75.38
OQU90275	Sorghum	mitochondrion	77.29	75.31
HORVU5Hr1G051530.5	Barley	mitochondrion	80.02	72.27
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	51.42	68.78
PGSC0003DMT400003501	Potato	cytosol	46.9	66.37
VIT_01s0010g00690.t01	Wine grape	mitochondrion	66.98	65.13
GSMUA_Achr3P28120_001	Banana	mitochondrion	64.77	63.97
KRH07469	Soybean	mitochondrion	53.94	63.97
KRH45285	Soybean	mitochondrion	45.64	62.9
Solyc05g010660.2.1	Tomato	mitochondrion	64.88	62.13
VIT_14s0083g00790.t01	Wine grape	cytosol	66.25	60.87
PGSC0003DMT400003507	Potato	cytosol	16.19	60.39
Bra023533.1-P	Field mustard	mitochondrion	60.99	59.49
KRH45290	Soybean	cytosol, mitochondrion, nucleus	15.77	58.82
KRH01430	Soybean	plastid	63.93	58.13
CDX85538	Canola	plastid	61.3	57.72
CDX90977	Canola	plastid	60.99	57.43
KRH45146	Soybean	mitochondrion	63.72	57.28
CDY70786	Canola	cytosol, mitochondrion, nucleus	14.2	57.2
CDY33562	Canola	mitochondrion	57.31	56.83
AT1G68990.2	Thale cress	mitochondrion	58.46	56.56
CDX95968	Canola	mitochondrion	57.52	56.33
Bra004354.1-P	Field mustard	mitochondrion	57.31	56.13
Os06t0652000-01	Rice	plastid	46.9	55.34
CDY26454	Canola	plastid	57.31	54.34
CDY07360	Canola	mitochondrion	50.47	54.3
CDY04262	Canola	mitochondrion	52.26	54.26
AT5G15700.2	Thale cress	plastid	59.41	53.76
Bra004010.1-P	Field mustard	plastid	50.58	53.33
CDX69507	Canola	mitochondrion	22.61	48.97
Bra008681.1-P	Field mustard	plastid	22.92	44.4
KRH07470	Soybean	cytosol, mitochondrion, nucleus	9.36	41.98
Solyc02g089330.2.1	Tomato	cytosol	11.25	34.08
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	1.47	10.94

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	EntrezGene:4346491	EMBL:AK066809	ProteinID:BAD23376.1	ProteinID:BAD23544.1
ProteinID:BAT07008.1	ProteinID:BAT07009.1	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075	InterPro:IPR037159	EnsemblPlantsGene:Os09g0246200	EnsemblPlants:Os09t0246200-01
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
UniProt:Q6K326	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI00003B0613
RefSeq:XP_015612356.1	SEG:seg	:	:	:	:

Description

RNA POLYMERASE SUBUNIT TMSimilar to DNA-directed RNA polymerase. (Os09t0246200-01);Similar to DNA-directed RNA polymerase. (Os09t0246200-02)

Coordinates

chr9:-:3456032..3467798

Molecular Weight (calculated)

106391.0 Da

IEP (calculated)

9.806

GRAVY (calculated)

-0.456

Length

951 amino acids

Sequence
(BLAST)

001: MPSSPTPATA PISCSPSPPL HLHLTARRQT LAPPMWRRLP ARRLASALLS SSAPLPHPLH RSLLLLLPAA SQRLAPSQTL PRFASSSAAV AAESVSSEEV
101: DELHHAIGEI ARGDPSVSAP APAAGQEGHR RRSGRGKHSA EAMAVPAAGQ EGHRRRSGRG KHSAEAMAVH GVGYHKYAML RRRQIQIETE AWEQAAEEYR
201: ELLADMCQQK LAPNLPYVKS LFLGWFEPLR DQIIAEQELV GERGARASHA RYFNMLPADM MAVITMHKLM GLLMTGSGDG SVRVIQAACQ IGEAIEHEVR
301: IHKFLEKTKK KSNKEMDNEE EGGDSDIAKE QERLRKKVTD LMKKQKIRQV RNIVKKQDNS KPWGQDAHAK VGSRLIELMI ETAYIQPPAS QSADGPPDIR
401: PAFTHEMRTV AREQQKSSRR YGVIKCDPLV RQGLDRTAKH MVIPYMPMLI PPISWTGYDK GAHLFLPSYV MRTHGARQQR DAVRRAPREQ MQSVFEALNT
501: LGSTKWRVNK RVLSIVDRIW SSGGRLADLV DRTDVALPEK PDTEDEDKLK KWRWTLRAAK KENSERHSQR CDVELKLAVA RKMKDEDGFY YPHNLDFRGR
601: AYPMHPYLNH LGSDLCRGVL EFAEGRPLGK SGLRWLKIHL ANLYAGGVDK LSYDGRIAFT ENHLEDIFDS ADRPLEGKRW WLGAEDPFQC LAVCINLTEA
701: LRSPSPETMI SHIPVHQDGS CNGLQHYAAL GRDKLGAIAV NLVAGEKPAD VYTGIATRVV EIMKNDALKD PATDPDAARA RLLLDQVDRK LVKQTVMTSV
801: YGVTYVGARE QIKRRLKERD MICDDSELFS ASCYAAKVTL TALGEMFQAA RSIMNWLGDC AKVIACENEP VRWTTPLGLP VVQPYRKLGR HLIKTSLQVL
901: TLQRETDKVM VKRQRTAFPP NFVHSLDGSH MMMTAVACKR QGLNFAVVGE L

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.