Factsheet for VIT_01s0010g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45290	Soybean	cytosol, mitochondrion, nucleus	22.7	87.06
VIT_01s0010g03200.t01	Wine grape	cytosol, nucleus, plastid	2.56	83.33
VIT_01s0010g03250.t01	Wine grape	cytosol	4.09	80.0
Solyc05g010660.2.1	Tomato	mitochondrion	75.36	74.22
KRH07470	Soybean	cytosol, mitochondrion, nucleus	15.85	73.11
VIT_14s0083g00790.t01	Wine grape	cytosol	75.66	71.5
CDY70786	Canola	cytosol, mitochondrion, nucleus	17.18	71.19
OQU90275	Sorghum	mitochondrion	70.65	70.8
GSMUA_Achr3P28120_001	Banana	mitochondrion	69.33	70.41
KRH07469	Soybean	mitochondrion	57.06	69.58
Zm00001d022169_P001	Maize	mitochondrion	69.12	69.33
KRH45285	Soybean	mitochondrion	48.67	68.99
TraesCS5B01G164300.1	Wheat	plastid	68.81	67.03
TraesCS5D01G171600.1	Wheat	plastid	68.81	67.03
Os09t0246200-01	Rice	mitochondrion	65.13	66.98
TraesCS5A01G167300.2	Wheat	plastid	66.46	66.67
CDY33562	Canola	mitochondrion	63.8	65.07
CDX95968	Canola	mitochondrion	64.42	64.88
HORVU5Hr1G051530.5	Barley	mitochondrion	68.92	64.01
AT1G68990.2	Thale cress	mitochondrion	64.21	63.89
CDY04262	Canola	mitochondrion	58.08	62.01
CDY07360	Canola	mitochondrion	55.73	61.65
VIT_11s0037g00630.t01	Wine grape	plastid	59.71	59.65
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.85	52.34

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
EntrezGene:100263361	wikigene:100263361	MapMan:15.6.1.1	Gene3D:3.30.70.370	ProteinID:CCB51153	ProteinID:CCB51153.1
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	UniProt:F6HGF2	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015074
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0034245	InterPro:IPR024075
InterPro:IPR037159	EntrezGene:LOC100263361	wikigene:LOC100263361	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311
SUPFAM:SSF56672	TIGR:TC55330	TIGR:TC59273	UniParc:UPI00015C98C5	ArrayExpress:VIT_01s0010g00690	EnsemblPlantsGene:VIT_01s0010g00690
EnsemblPlants:VIT_01s0010g00690.t01	unigene:Vvi.10221	RefSeq:XP_002267464	RefSeq:XP_002267464.1	SEG:seg	:

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F6HGF2]

Coordinates

chr1:+:15828712..15858003

Molecular Weight (calculated)

110586.0 Da

IEP (calculated)

9.130

GRAVY (calculated)

-0.463

Length

978 amino acids

Sequence
(BLAST)

001: MWRNLAKHAY TRRLQLSSQH SSFSPSNCTS RFYFPDKARA LESQDHVNSL RPVAGLRRIG VLSFQQDELG RPGFGVTKTP VNFFGLFGYQ KGYASAAEAI
101: ASEEDMSGVD EVQELVEEVN KGDKLEKQPK LIGGVAQGKH NVLRRRQIKM ETEAWEEAAK EYRELLSDMC EQKLAPNLPY IKSLFLGWFE PLRDVIAAEQ
201: DLCKQGKNRA AYAPYFDHLP ADMMAVITMH KLMGLLMTGE GNGSARVVQA ACHIGEAIEH EVRIQRFMEK TKKKSASSNN PDGGSNPVTK EQEKLRKKVS
301: MLMKKQKLQQ VRQIVKRQDD SKPWGQDANV KVGSRLIELL IETAYIQPPA DQLGDGPPDI RPAFVHTLKT VIKETQKGTR RYGVIECDPL VRKGLEKTAR
401: HMVIPYMPML VPPLNWTGYD KGAYLFLPSY VMRIHGARQQ REAIKRAPRK ALEPAFEALN TLGNTKWRIN KRVLGVIDRI WASGGRLADL VDREDVPLPE
501: EPDTEDEAEI RKWKWKVRSV KKENSERHSQ RCDIELKLAV ARKMKDEDGF FYPHNLDFRG RAYPMHPYLN HLGSDLCRGI LEFAEGRPLG KSGLRWLKIH
601: LANVYAGGVD KLSYEGRVAF TENHLEDIFD SADRPLEGRR WWLSAEDPFQ CLATCINLSE ALRSSSPETT ISHMPVHQDG SCNGLQHYAA LGRDKLGAAA
701: VNLVAGEKPA DVYSGIAARV LDIMQRDAQK DPATEPNALR ARLLISQVDR KLVKQTVMTS VYGVTYIGAR DQIKRRLKER CAIADEGEVF SASCYAAKTT
801: LTALGEMFEA ARSIMSWLGD CAKVIASENH PVRWNTPLGL PVVQPYRKLG RHLIKTSLQV LSLQRETDKV MVKRQRTAFP PNFVHSLDGS HMMMTAVACQ
901: KAGLNFAGVH DSYWTHACDV DEMNRILREK FVELYGMPIL ENLLEGFQKS FPTLNFPPLP ERGDFDLREV LESPYFFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.