CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07469	Soybean	mitochondrion	84.93	73.07
VIT_01s0010g00690.t01	Wine grape	mitochondrion	68.99	48.67
Os09t0246200-01	Rice	mitochondrion	62.9	45.64
Solyc05g010660.2.1	Tomato	mitochondrion	65.51	45.52
GSMUA_Achr3P28120_001	Banana	mitochondrion	62.32	44.65
OQU90275	Sorghum	mitochondrion	62.03	43.85
TraesCS5A01G167300.2	Wheat	plastid	61.45	43.49
Zm00001d022169_P001	Maize	mitochondrion	61.01	43.18
CDY33562	Canola	mitochondrion	58.7	42.23
TraesCS5B01G164300.1	Wheat	plastid	61.45	42.23
TraesCS5D01G171600.1	Wheat	plastid	61.3	42.13
CDX95968	Canola	mitochondrion	59.13	42.02
AT1G68990.2	Thale cress	mitochondrion	58.7	41.2
CDY07360	Canola	mitochondrion	52.03	40.61
KRH01430	Soybean	plastid	61.16	40.34
CDY04262	Canola	mitochondrion	53.19	40.07
HORVU5Hr1G051530.5	Barley	mitochondrion	60.87	39.89
KRH45146	Soybean	mitochondrion	60.58	39.51
KRH63115	Soybean	mitochondrion	28.84	36.38
KRH54896	Soybean	plastid	48.84	34.64
KRH03007	Soybean	plastid	47.54	34.49
KRH07470	Soybean	cytosol, mitochondrion, nucleus	2.61	8.49
KRH72339	Soybean	cytosol, mitochondrion, nucleus	2.32	5.54
KRH63538	Soybean	cytosol, mitochondrion, nucleus	0.72	3.31
CDY70786	Canola	cytosol, mitochondrion, nucleus	0.29	0.85
KRH45290	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.287.260	Gene3D:1.10.287.280	MapMan:15.6.1.1
EMBL:ACUP02005059	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	EnsemblPlantsGene:GLYMA_08G263000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006390	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0034245	InterPro:IPR024075	InterPro:IPR037159	UniProt:K7L8Z9	EnsemblPlants:KRH45285	ProteinID:KRH45285
ProteinID:KRH45285.1	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002966989	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:28287338..28295322

Molecular Weight (calculated)

78459.0 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.592

Length

690 amino acids

Sequence
(BLAST)

001: MWTNLAKRAS STLRNTFRVS SLYPRFCKPQ TSKTINPYPF QAFPKAGVSR SKFLFYEGFS SVAEAIESTD TEDDYDEVQK LLQQMAKAEH KVDNSSSSSS
101: YKYKLLKRRQ IKSETEAWAE AAREYEELLE DMREQKLAPN LPYMKSLFLG WFEPLRNAIL ADQELCKDSK CRMSHAPYFN DLPADMMAVV TMHKLMALLM
201: TNTNGVGTAR VIQAACQIGE AVENEARIYQ FMKREKENKS SHVVPVEQRG ELTEENGEMD KKQSRLRKRV AALMKKQKKL QAMGIVRGQD DWKAWGQEAQ
301: VKVGSRLMQL LIETAYIQPP ANLIGDGPPD IRPAFKHTLK TLSSESQKET RRYGVIECDP LVQNGLEKSA RHMVIPYMPM LVPPINWTGY DKGAYLFLPS
401: YVMRVHGAKQ QREAVKRAPK SQLDPVFEAL NTLGSTKWRV NKRVLCVIDQ IWANGGRLAD LVDRENVPEP KEPDTKDEAE IRKWKWKVKA VKKENNERHS
501: QRCDIELKLA VARKMKDEEG FYYPHNLDFR GRAYPMHPYL NHLGSDLCRG ILEFSEGRPL GKSGLCWLKI HLANLYAGGV DKLSYDGRIE FTENHLDDIF
601: DSADRPLEGK RWWLQAEDPF QCLAACTNLS EALRSPTPET TISHMPVHQD GSCNGLQHYA ALGRDKLGAA AVNLVGGDQP ADVYSGIAAR

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.