CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022169_P001	Maize	mitochondrion	93.03	93.13
PGSC0003DMT400003507	Potato	cytosol	21.41	81.96
KRH45290	Soybean	cytosol, mitochondrion, nucleus	21.0	80.39
Os09t0246200-01	Rice	mitochondrion	75.31	77.29
TraesCS5D01G171600.1	Wheat	plastid	78.89	76.69
TraesCS5B01G164300.1	Wheat	plastid	78.89	76.69
TraesCS5A01G167300.2	Wheat	plastid	75.92	76.0
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	55.23	75.81
HORVU5Hr1G051530.5	Barley	mitochondrion	79.3	73.5
GSMUA_Achr3P28120_001	Banana	mitochondrion	69.98	70.92
VIT_01s0010g00690.t01	Wine grape	mitochondrion	70.8	70.65
CDY70786	Canola	cytosol, mitochondrion, nucleus	17.01	70.34
KRH07470	Soybean	cytosol, mitochondrion, nucleus	15.27	70.28
Solyc05g010660.2.1	Tomato	mitochondrion	67.73	66.57
VIT_14s0083g00790.t01	Wine grape	cytosol	69.77	65.8
PGSC0003DMT400003501	Potato	cytosol	44.67	64.88
Bra023533.1-P	Field mustard	mitochondrion	64.04	64.1
KRH01430	Soybean	plastid	68.55	63.96
KRH45146	Soybean	mitochondrion	68.44	63.14
CDY33562	Canola	mitochondrion	61.48	62.57
KRH07469	Soybean	mitochondrion	51.23	62.34
CDX95968	Canola	mitochondrion	61.89	62.2
Bra004354.1-P	Field mustard	mitochondrion	61.78	62.1
KRH45285	Soybean	mitochondrion	43.85	62.03
CDX85538	Canola	plastid	64.04	61.88
CDX90977	Canola	plastid	64.04	61.88
AT1G68990.2	Thale cress	mitochondrion	61.68	61.24
CDX69507	Canola	mitochondrion	27.05	60.14
Bra004010.1-P	Field mustard	plastid	55.23	59.76
CDY04262	Canola	mitochondrion	55.64	59.28
CDY26454	Canola	plastid	60.25	58.62
CDY07360	Canola	mitochondrion	53.07	58.6
AT5G15700.2	Thale cress	plastid	61.78	57.37
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	7.27	55.47
Bra008681.1-P	Field mustard	plastid	27.77	55.19
EER88745	Sorghum	plastid	52.77	53.7
Solyc02g089330.2.1	Tomato	cytosol	10.04	31.21

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	EntrezGene:8079207	UniProt:A0A1W0W7H2	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159	EnsemblPlants:OQU90275
ProteinID:OQU90275	ProteinID:OQU90275.1	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900
PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	EnsemblPlantsGene:SORBI_3002G378100
SUPFAM:SSF56672	SignalP:SignalP-noTM	UniParc:UPI0001A8393A	RefSeq:XP_002461035.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:73461807..73472049

Molecular Weight (calculated)

111152.0 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.527

Length

976 amino acids

Sequence
(BLAST)

001: MWRRLPTRRL ASVLLSSSPL QRAAATHAPP LERHLPATAS GLLPPSRLPR WQQDPRWFAS SSAAEAVSSE DAEELHHAIE EIVRAQPSQN LPRPQSVAEE
101: RQAPGRDHRS RHRRSGRGRH VEVMAAEHGM TYHRYTSLRR RQIRVETEAW EQAAKEYREL LADMCEQKLA PNLPYIKSLF LGWFEPLRDQ IVTEQELVAD
201: PGSRASHGPY FNMLPADMMA VITMHKLMGL LMTGSGDGSV RVIQAACQIG EAIEHEVRIN RFLEKTRKKS NKEMEKEEEA AGDTDIAKEQ QRLRKKVTDL
301: MKKQKLRQVR NIVKNQDNSR PWGQDVQAKV GSRLIELFMD TAHIQPPASQ SSDGLPDIRP AFRHEMRTVA KEQQKSSRRY GVIKCDPLVR QGLDRTAKHM
401: VIPYMPMLIP PICWTGYDKG AHLFLPSYVM RTHGARQQRE AVKRAPREQM QSVFEALNTL GSTKWRVNKR VLSIVDRIWS SGGRLADLVD RTDVPLPEKP
501: DTEDETLIKN WKWHLRSVKK ENSERHSQRC DVELKLAVAR KMKDEEGFYY PHNLDFRGRA YPMHPYLNHL GSDLCRGILE FAEGRPLGKS GLHWLKIHLA
601: NLYAGGVDKL SYDGRVAFTE NHLEEIFDSA DRPLEGKRWW LGAEDPFQCL AVCMNLTEAL RSSSPETTIS HIPVHQDGSC NGLQHYAALG RDKLGAIAVN
701: LVAGEKPADV YTGIATRVLE IMRMDAQKDP SIDPDVARAR LIVDQVDRKL VKQTVMTSVY GVTYVGARDQ IKRRLKERGV IPDEAELFGA SCYAAKVTLT
801: ALGEMFQAAR GIMNWLGDCA KVIACENEPV RWTTPLGLPV VQPYRKLGRH LIKTSLQVLT LQRETDKVMV KRQRTAFPPN FVHSLDGSHM MMTAVACKRQ
901: GLNFAGVHDS YWTHACDVDT MNKILREKFV ELYDTPILEN LLESFEKSFP KLKFPPLPER GDFDMKEVLE SPYFFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.