Factsheet for Bra023533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85538	Canola	plastid	99.38	95.94
PGSC0003DMT400003507	Potato	cytosol	20.62	78.82
AT5G15700.2	Thale cress	plastid	82.46	76.5
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	52.21	71.59
VIT_14s0083g00790.t01	Wine grape	cytosol	69.13	65.12
PGSC0003DMT400003501	Potato	cytosol	44.82	65.03
GSMUA_Achr3P28120_001	Banana	mitochondrion	63.69	64.49
OQU90275	Sorghum	mitochondrion	64.1	64.04
Zm00001d022169_P001	Maize	mitochondrion	63.59	63.59
Bra004354.1-P	Field mustard	mitochondrion	61.74	62.0
TraesCS5B01G164300.1	Wheat	plastid	63.69	61.85
TraesCS5D01G171600.1	Wheat	plastid	63.69	61.85
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	8.1	61.72
TraesCS5A01G167300.2	Wheat	plastid	61.23	61.23
Os09t0246200-01	Rice	mitochondrion	59.49	60.99
Bra008681.1-P	Field mustard	plastid	30.67	60.9
KRH01430	Soybean	plastid	64.82	60.42
KRH45146	Soybean	mitochondrion	64.62	59.55
HORVU5Hr1G051530.5	Barley	mitochondrion	63.69	58.97
Bra004010.1-P	Field mustard	plastid	53.64	57.98
Bra039230.1-P	Field mustard	plastid	56.1	55.87
Bra032120.1-P	Field mustard	plastid	53.33	55.32
Solyc02g089330.2.1	Tomato	cytosol	12.72	39.49

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	EnsemblPlantsGene:Bra023533	EnsemblPlants:Bra023533.1	EnsemblPlants:Bra023533.1-P	ncoils:Coil
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159
UniProt:M4E430	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI00025436B9
SEG:seg	:	:	:	:	:

Description

AT5G15700 (E=0.0) | DNA-directed RNA polymerase (RPOT2)

Coordinates

chrA02:-:3820145..3825074

Molecular Weight (calculated)

110694.0 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.474

Length

975 amino acids

Sequence
(BLAST)

001: MWRNIAKHAI TRSQARFGSK GRGFLAFSHE PIVKGSSFRF PLFGSIPDPK CHELGFSNRV GSGLSNNGSC LNGFLARGYT SVAEEVSSTD VEEDPSLADE
101: VEELLKEMKK EKKREDHRSW RMRNQESVGM GRSKYRNLWR RQVKIETEEW ERAANEYREL LADMCEQKLA PNLPYVKSLF LGWFEPLRDV ISKEQELFRL
201: GKSKAVYAHY IDQLPADMVA VITMHKLMGH LMTGGDNGCV KVVQAACSVG DAIEQEIRIC TFLDKTRKKE EDDNEESGEV ENGNPMREQD KLRKKVNDLI
301: KKQKLSAVRK ILQSHDYTKP WSADARAKVG SHLIELLVRT AYIQSPTNQQ DNDLPDVRPA FKHTFKTVAQ GSMKSGRKYG VIECDPLVRK GLEKTGRYAV
401: MPYMPMLVPP LNWSGYDKGA YLFLASYIMK THGAKQQREA IKSAPKGQLK PVFEALDTLG STRWRVNKRV LTVVDRIWSS GGCTADLVDR SDVPLPEKPD
501: TEDESILKKW KWEMKSAKKE NSERHSLRCD IELKLSVARK MKDEEGFYYP HNVDFRGRAY PMPPHLNHLG SDLCRGVLEF AEGRPLGSPG LRWLKIHLAN
601: LYAGGVDKLS YEGRLAFTES HLDDIFDSAD RPLEGNRWWL QAEDPFQCLA VCINLTEALR SPSPETVLSH IPIHQDGSCN GLQHYAALGR DTIGAEAVNL
701: VAGEKPADVY SEIATRVLDI MRRDADKDPE IYPDALRARK LINQVDRKLV KQTVMTSVYG VTYIGARDQI KRRLKERSAF SDDKEIFGAA CYAAKVTLAA
801: MDEMFEAARA IMHWFGECAK IIASENETVR WTTPLGLPVV QPYLQMGTKL VKTSLQTLSL QRETDKVIVR RQRTAFPPNF IHSLDGSHMM MTAVACKRVG
901: VCFAGVHDSF WTHACDVDKL NKILREKFVE LYSQPILENL LESFEKSFPH LEFPPLPERG DLDLKVVLES TYFFN

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.