Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023533.1-P | Field mustard | mitochondrion | 76.5 | 82.46 |
| CDX90977 | Canola | plastid | 77.64 | 80.79 |
| CDX85538 | Canola | plastid | 77.16 | 80.3 |
| PGSC0003DMT400003507 | Potato | cytosol | 18.36 | 75.69 |
| CDY26454 | Canola | plastid | 71.55 | 74.98 |
| Solyc02g089340.2.1 | Tomato | cytosol, mitochondrion, nucleus | 47.38 | 70.04 |
| CDX69507 | Canola | mitochondrion | 27.5 | 65.83 |
| VIT_14s0083g00790.t01 | Wine grape | cytosol | 63.27 | 64.25 |
| PGSC0003DMT400003501 | Potato | cytosol | 40.91 | 63.99 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 56.61 | 61.79 |
| OQU90275 | Sorghum | mitochondrion | 57.37 | 61.78 |
| Zm00001d022169_P001 | Maize | mitochondrion | 56.71 | 61.13 |
| TraesCS5A01G167300.2 | Wheat | plastid | 55.38 | 59.69 |
| TraesCS5B01G164300.1 | Wheat | plastid | 56.9 | 59.56 |
| TraesCS5D01G171600.1 | Wheat | plastid | 56.9 | 59.56 |
| Bra008681.1-P | Field mustard | plastid | 27.78 | 59.47 |
| Os09t0246200-01 | Rice | mitochondrion | 53.76 | 59.41 |
| KRH01430 | Soybean | plastid | 59.09 | 59.37 |
| AT1G68990.2 | Thale cress | mitochondrion | 55.47 | 59.31 |
| KRH45146 | Soybean | mitochondrion | 58.23 | 57.84 |
| HORVU5Hr1G051530.5 | Barley | mitochondrion | 56.99 | 56.89 |
| AT2G24120.1 | Thale cress | plastid | 50.71 | 53.68 |
| Solyc02g089330.2.1 | Tomato | cytosol | 11.7 | 39.17 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.150.20 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 |
| MapMan:15.6.1.1 | Gene3D:3.30.70.370 | EntrezGene:831424 | ProteinID:AED92194.1 | ArrayExpress:AT5G15700 | EnsemblPlantsGene:AT5G15700 |
| RefSeq:AT5G15700 | TAIR:AT5G15700 | RefSeq:AT5G15700-TAIR-G | EnsemblPlants:AT5G15700.2 | TAIR:AT5G15700.2 | ncoils:Coil |
| InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | UniProt:F4KB75 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0034062 | GO:GO:0042651 | InterPro:IPR024075 | InterPro:IPR037159 |
| RefSeq:NP_001190318.1 | PFAM:PF00940 | PFAM:PF14700 | PO:PO:0000293 | PO:PO:0007057 | PO:PO:0009047 |
| ScanProsite:PS00489 | ScanProsite:PS00900 | PANTHER:PTHR10102 | PANTHER:PTHR10102:SF1 | InterPro:RNA_POL_N_sf | InterPro:RPOL_N |
| SMART:SM01311 | SUPFAM:SSF56672 | UniParc:UPI0001E930B7 | SEG:seg | : | : |
Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
Coordinates
chr5:-:5115300..5121840
Molecular Weight (calculated)
119158.0 Da
IEP (calculated)
8.830
GRAVY (calculated)
-0.457
Length
1051 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.