Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089330.2.1 | Tomato | cytosol | 29.76 | 63.69 |
| Solyc02g089340.2.1 | Tomato | cytosol, mitochondrion, nucleus | 63.84 | 60.34 |
| VIT_14s0083g00790.t01 | Wine grape | cytosol | 72.47 | 47.05 |
| Os09t0246200-01 | Rice | mitochondrion | 66.37 | 46.9 |
| Bra023533.1-P | Field mustard | mitochondrion | 65.03 | 44.82 |
| OQU90275 | Sorghum | mitochondrion | 64.88 | 44.67 |
| TraesCS5A01G167300.2 | Wheat | plastid | 64.58 | 44.51 |
| Zm00001d022169_P001 | Maize | mitochondrion | 64.43 | 44.41 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 62.8 | 43.82 |
| KRH01430 | Soybean | plastid | 67.86 | 43.59 |
| CDX90977 | Canola | plastid | 65.33 | 43.47 |
| CDX85538 | Canola | plastid | 65.03 | 43.27 |
| TraesCS5D01G171600.1 | Wheat | plastid | 64.58 | 43.23 |
| TraesCS5B01G164300.1 | Wheat | plastid | 64.43 | 43.13 |
| KRH45146 | Soybean | mitochondrion | 67.56 | 42.91 |
| HORVU5Hr1G051530.5 | Barley | mitochondrion | 64.88 | 41.41 |
| AT5G15700.2 | Thale cress | plastid | 63.99 | 40.91 |
| CDY26454 | Canola | plastid | 58.04 | 38.88 |
| PGSC0003DMT400028972 | Potato | mitochondrion | 23.51 | 33.55 |
| CDX69507 | Canola | mitochondrion | 20.09 | 30.75 |
| Bra008681.1-P | Field mustard | plastid | 21.73 | 29.74 |
| PGSC0003DMT400003507 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 | MapMan:15.6.1.1 |
| InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR024075 | InterPro:IPR037159 | UniProt:M0ZLT1 |
| PFAM:PF00940 | PFAM:PF14700 | EnsemblPlantsGene:PGSC0003DMG401001383 | PGSC:PGSC0003DMG401001383 | EnsemblPlants:PGSC0003DMT400003501 | ScanProsite:PS00900 |
| PANTHER:PTHR10102 | PANTHER:PTHR10102:SF1 | InterPro:RNA_POL_N_sf | InterPro:RPOL_N | SMART:SM01311 | SUPFAM:SSF56672 |
| UniParc:UPI000295E0C4 | SEG:seg | : | : | : | : |
Description
DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG401001383]
Coordinates
chr2:-:45233404..45240348
Molecular Weight (calculated)
76251.8 Da
IEP (calculated)
9.288
GRAVY (calculated)
-0.494
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFQNLGEFD EFLRRPLLCA MKSQVSNNDI CRKSYASVAE AVAVSSTDAE EDVSVVGEVQ ELLTELKKEE KKQFTFRRRN QRLLTSGIDR RKYPALKRRQ
101: VKIETQAWEL AAKEYRELLF DMCEQKLAPN LPYVKSLFLG WFEPLRDKIA QEQELCIQGK SKAAYSKYFH LLPADMMAVI TMHKLMGLLM TGGEHGNARV
201: VQAALTIGDA IEQEVRIHKF LEKTEKHKAE KDRKMEDGEH ATLEQKKLHK KVTSLMKKQK LRAVNQIVRS QDDSKPWGQD AKAKVGSRLI EFLLQTAYIQ
301: SPADQLAVDP PDIRPAFIHS TRTVAKETKS ASRRYGVIQC DELVFKGLER TARHMVIPYM PMLVPPVKWT GYDKGGHLYL PSYVMRTHGA RQQREAVKRA
401: SRNQLRPVFE ALDTLGSTKW RINKRVLSVV DRIWAGGGRL ADLVDRDDAP LPEEPDTEDE AVCTKWRWKV KSVKKENRER HSQRCDIELK LAVAHRMKDE
501: EGFFYPHNVD FRGRAYPMHP HLNHLGSDIC RGVLEFAAGR PLGESGLRWL KIHLANLFAG GVDKLSLDGR IAFTESHLDD IFDSADKPLE GRRWWLNAED
601: PFQCLAVCIN LSEAVRSSSP ETVISHIPVH QDGSCNGLQH YAALGRDKLG AAAVNLVAGE KPADVYSGIA AR
101: VKIETQAWEL AAKEYRELLF DMCEQKLAPN LPYVKSLFLG WFEPLRDKIA QEQELCIQGK SKAAYSKYFH LLPADMMAVI TMHKLMGLLM TGGEHGNARV
201: VQAALTIGDA IEQEVRIHKF LEKTEKHKAE KDRKMEDGEH ATLEQKKLHK KVTSLMKKQK LRAVNQIVRS QDDSKPWGQD AKAKVGSRLI EFLLQTAYIQ
301: SPADQLAVDP PDIRPAFIHS TRTVAKETKS ASRRYGVIQC DELVFKGLER TARHMVIPYM PMLVPPVKWT GYDKGGHLYL PSYVMRTHGA RQQREAVKRA
401: SRNQLRPVFE ALDTLGSTKW RINKRVLSVV DRIWAGGGRL ADLVDRDDAP LPEEPDTEDE AVCTKWRWKV KSVKKENRER HSQRCDIELK LAVAHRMKDE
501: EGFFYPHNVD FRGRAYPMHP HLNHLGSDIC RGVLEFAAGR PLGESGLRWL KIHLANLFAG GVDKLSLDGR IAFTESHLDD IFDSADKPLE GRRWWLNAED
601: PFQCLAVCIN LSEAVRSSSP ETVISHIPVH QDGSCNGLQH YAALGRDKLG AAAVNLVAGE KPADVYSGIA AR
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVNIVSTPRL ELYVLDGREE RQTSCKGQNK RKAAGFCIQR RRQREGVEEI L
Arabidopsis Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.