Factsheet for Bra008681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69507	Canola	mitochondrion	64.36	71.98
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	17.52	67.19
PGSC0003DMT400003507	Potato	cytosol	23.42	45.1
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	48.07	33.19
Bra023533.1-P	Field mustard	mitochondrion	60.9	30.67
GSMUA_Achr3P28120_001	Banana	mitochondrion	55.19	28.14
AT5G15700.2	Thale cress	plastid	59.47	27.78
OQU90275	Sorghum	mitochondrion	55.19	27.77
Zm00001d022169_P001	Maize	mitochondrion	53.97	27.18
TraesCS5D01G171600.1	Wheat	plastid	54.38	26.59
TraesCS5B01G164300.1	Wheat	plastid	54.38	26.59
Bra004354.1-P	Field mustard	mitochondrion	52.14	26.36
HORVU5Hr1G051530.5	Barley	mitochondrion	54.38	25.36
KRH01430	Soybean	plastid	53.97	25.33
TraesCS5A01G167300.2	Wheat	plastid	49.49	24.92
KRH45146	Soybean	mitochondrion	52.95	24.57
VIT_14s0083g00790.t01	Wine grape	cytosol	50.92	24.15
Bra039230.1-P	Field mustard	plastid	48.07	24.11
Bra004010.1-P	Field mustard	plastid	43.38	23.61
Os09t0246200-01	Rice	mitochondrion	44.4	22.92
Bra032120.1-P	Field mustard	plastid	43.18	22.55
PGSC0003DMT400003501	Potato	cytosol	29.74	21.73
Solyc02g089330.2.1	Tomato	cytosol	1.02	1.59

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	Gene3D:3.30.70.370	EnsemblPlantsGene:Bra008681
EnsemblPlants:Bra008681.1	EnsemblPlants:Bra008681.1-P	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	UniProt:M4CWT4	PFAM:PF00940
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF0	SUPFAM:SSF56672	UniParc:UPI0002544DFA	:

Description

AT5G15700 (E=1e-084) | DNA-directed RNA polymerase (RPOT2)

Coordinates

chrA10:+:13363097..13369789

Molecular Weight (calculated)

55574.7 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.217

Length

491 amino acids

Sequence
(BLAST)

001: MRIQNNIGSN GYFNIYLMPG RYSNSQIYSG LDYATLMPGR YSTSQIYSGL DYANLLIKTP PAQISRLYNL GARKRVLAGS SGPLGCESVI YMVAQKMKDE
101: EGFYYPHNID FRGRAYPMPP HLNHLGSDLC RGVLEFAEGR PLRSPGLRWL KIQLANLYAG GVDKLSYEGR LAFTENHLED IFDSADRPLE GSRWWLQAED
201: PFQCLAVCIN LTEALRSPSP ETVLSHIPIH QDGSCNGFQH YAALGRDTVT STAIDEMFEA ARAIMRWFGE CAKVKTSLQT LSLQRETDKV VVRRQRTAFP
301: PNFIHSLDGC HMMMTTVTCK RAGLCFAGVH DSFWTHACDV DKLNKILREK FVELYAQPIL ENLLESFEKS FPHLDFPPLP ERGDLDLKVV LDSPYFLLEL
401: FFGQMAMANI PIPKIQLQHC FCLPSPKNRI YQLINKSDGF IRSSEIFEAL SRSIDERFLQ NRVSSQGLSS VLESTLCWEA LNDVALGRGD Y

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.