Factsheet for Bra039230.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34797	Canola	plastid	96.02	97.92
Bra032120.1-P	Field mustard	plastid	86.72	90.32
AT2G24120.1	Thale cress	plastid	88.97	87.71
PGSC0003DMT400028972	Potato	mitochondrion	38.71	80.47
KRH63115	Soybean	mitochondrion	41.78	74.77
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	14.2	74.73
Zm00001d030829_P001	Maize	mitochondrion	14.61	71.5
KRH63538	Soybean	cytosol, mitochondrion, nucleus	10.32	66.89
VIT_11s0037g00630.t01	Wine grape	plastid	64.45	64.45
Os06t0652000-01	Rice	plastid	51.17	62.16
KRH03007	Soybean	plastid	59.55	61.3
Zm00001d014049_P001	Maize	mitochondrion	12.67	60.78
Solyc07g005930.2.1	Tomato	nucleus	61.29	60.48
VIT_01s0010g03250.t01	Wine grape	cytosol	3.06	60.0
Zm00001d023696_P001	Maize	plastid	15.42	59.68
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	51.79	59.3
Zm00001d034215_P001	Maize	mitochondrion	10.52	59.2
KRH72339	Soybean	cytosol, mitochondrion, nucleus	17.26	58.48
TraesCS7B01G411000.1	Wheat	nucleus	45.76	58.26
Zm00001d021198_P001	Maize	cytosol	14.4	57.79
KRH54896	Soybean	plastid	57.2	57.55
Zm00001d044404_P001	Maize	mitochondrion	7.15	57.38
Zm00001d043127_P001	Maize	endoplasmic reticulum	18.49	56.92
Bra023533.1-P	Field mustard	mitochondrion	55.87	56.1
EER88745	Sorghum	plastid	54.44	55.58
TraesCS7A01G503900.1	Wheat	plastid	53.52	55.22
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.84	54.03
Zm00001d046835_P002	Maize	plastid	54.44	53.78
Bra004354.1-P	Field mustard	mitochondrion	53.12	53.55
Bra004010.1-P	Field mustard	plastid	49.03	53.22
Zm00001d026323_P001	Maize	cytosol	7.56	48.68
Bra008681.1-P	Field mustard	plastid	24.11	48.07
Zm00001d007570_P001	Maize	cytosol	7.46	48.03
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.03	46.09
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	7.25	38.59
GSMUA_Achr1P09550_001	Banana	mitochondrion	14.4	38.21

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	EnsemblPlantsGene:Bra039230	EnsemblPlants:Bra039230.1	EnsemblPlants:Bra039230.1-P	ncoils:Coil
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159
UniProt:M4FDQ9	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002542DF0
SEG:seg	:	:	:	:	:

Description

AT2G24120 (E=0.0) PDE319, SCA3 | SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase

Coordinates

chrA09:+:31363595..31368042

Molecular Weight (calculated)

110985.0 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.400

Length

979 amino acids

Sequence
(BLAST)

001: MASPAAPSPS LSIYQTSLFH PQTSLVTWLK PPSSSALFRR KPTKRLLPPI SAASSSSSST SLSLTEKPTT VHFHGNLIES FESHDSFPGA IKGAAFTENP
101: VERSELSATR RLFTQDPPWI SALFLKGLTK MTVKIERKDI DKRKFDSLRR RQVKEETEAW ERMVEEYRDL EKEMCEKSLA PNLPYVKHMF LGWFQPLKEV
201: IEREQRLQKN KSKKVRAAYA PHIELLPADK MAVIVMHKMM GLVMSGHEDG CIQVVQAAVS IGIAIEHEVR IHNFLKRTRK NNAGDSQEEL KDKQLLRKRV
301: NSLIRRKRII DALKVVKSEG IKPWGRATQA KLGSRLLELL METAYVQPPL TQSGDSIPEF RPAFRHKFKT VTKYPGSKLV RRYGVIECDS LLLAGLDKSA
401: KHMLIPYVPM LVPPKRWRGY DKGGYLFLPS YIMRTHGSKK QQDALKDISS KTAHRVFEAL DTLGNTKWRV NRKILDVVER LWADGGNIAG LVNREDVPIP
501: EKPSSEDPEE LQSWKWSVRK AKKTNRERHS LRCDVELKLS VARKMKDEEG FYYPHNLDFR GRAYPMHPHL NHLSSDLCRG TLEFAEGRPL GKSGLYWLKI
601: HLANLYAGGV EKLSHEGRLS FVENHLDDIM DSAENAIHGR RWWLKAEDPF QCLAACVVLA QALKSPSPYS VISHLPIHQD GSCNGLQHYA ALGRDSFEAA
701: AVNLVAGEKP ADVYSEISLR VHEIMKKDSS KDPESNPTAA LAKILINQVD RKLVKQTVMT SVYGVTYVGA REQIKRRLEE KGVITDERML FSAACYSAKV
801: TLAALGEIFE AARAIMSWLG DCAKIIATDN HPVRWTTPLG LPVVQPYCRS ERHLIRTSLQ VLALQREGNT VDVRKQRTAF PPNFVHSLDG THMMMTAVAC
901: REAGLNFAGV HDSYWTHACD VDTMNRILRE KFVELYSTPI LEDLLQSFQE SYPNLVFPPV PKRGGFDLKE VLKSQYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.