Factsheet for Zm00001d023696_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030829_P001	Maize	mitochondrion	71.94	91.0
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	58.5	79.57
Zm00001d014049_P001	Maize	mitochondrion	50.59	62.75
Zm00001d035375_P002	Maize	mitochondrion, nucleus	30.43	62.1
VIT_01s0010g03250.t01	Wine grape	cytosol	11.46	58.0
Zm00001d043127_P001	Maize	endoplasmic reticulum	71.54	56.92
Zm00001d034215_P001	Maize	mitochondrion	38.74	56.32
Zm00001d044404_P001	Maize	mitochondrion	20.16	41.8
Zm00001d021198_P001	Maize	cytosol	26.48	27.46
KRH63115	Soybean	mitochondrion	56.92	26.33
PGSC0003DMT400028972	Potato	mitochondrion	45.85	24.63
TraesCS7B01G411000.1	Wheat	nucleus	71.54	23.54
CDY44514	Canola	cytosol	11.46	23.2
Os06t0652000-01	Rice	plastid	71.94	22.58
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	70.75	20.94
EER88745	Sorghum	plastid	75.1	19.81
Zm00001d046835_P002	Maize	plastid	77.47	19.78
TraesCS7A01G503900.1	Wheat	plastid	72.33	19.28
KRH03007	Soybean	plastid	59.29	15.77
CDY34797	Canola	plastid	59.68	15.73
KRH54896	Soybean	plastid	60.47	15.72
CDX76837	Canola	plastid	60.08	15.65
Bra039230.1-P	Field mustard	plastid	59.68	15.42
VIT_11s0037g00630.t01	Wine grape	plastid	59.29	15.32
CDY39695	Canola	plastid	58.89	15.31
CDY20283	Canola	plastid	58.89	15.27
AT2G24120.1	Thale cress	plastid	59.68	15.21
Solyc07g005930.2.1	Tomato	nucleus	58.5	14.92
Zm00001d022169_P001	Maize	mitochondrion	56.92	14.77
Bra032120.1-P	Field mustard	plastid	52.57	14.15
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	9.49	13.04
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	58.5	8.38
KRH63538	Soybean	cytosol, mitochondrion, nucleus	1.19	1.99
Zm00001d026323_P001	Maize	cytosol	1.19	1.97
Zm00001d007570_P001	Maize	cytosol	1.19	1.97
KRH72339	Soybean	cytosol, mitochondrion, nucleus	1.98	1.73

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	UniProt:A0A1D6IUV6	ProteinID:AQK39803.1
InterPro:DA1-like	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	PFAM:PF00940	PFAM:PF12315	ScanProsite:PS00900
PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672	UniParc:UPI000842E944	EnsemblPlantsGene:Zm00001d023696	EnsemblPlants:Zm00001d023696_P001
EnsemblPlants:Zm00001d023696_T001	SEG:seg	:	:	:	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr10:+:15886687..15888457

Molecular Weight (calculated)

27944.8 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.372

Length

253 amino acids

Sequence
(BLAST)

001: MATTSDASSS SSTSSSMKKG AKTEFEKRLG EFFKHQIETD SSVAYGDGFR ALHVALDILG STKWRVNRRV HDVVETIWSQ GGDIAGLVDE ANVARKMREE
101: DGFYYPHNLD FRGRACPMHP HLCHLGSYLC RGVLEYAEGR PLGKYGLCWL KIHLANKYGG GIEKLSHEGK LAFVENQLFD IFDSAANPVD GNCWWTNAED
201: PFQCLAACMD LSDALRSPSP YHAVSHLPIH QDGSCNGLQH YAALGRDYGL VGS

Best Arabidopsis Sequence Match ( AT1G68990.2 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSVSRI
401: VDYARHMVIP YLPMLIPPQN WTGYDQGAHF FLPSYVMRTH GAKQQRTVMK RTPKEQLEPV YEALDTLGNT KWKINKKVLS LVDRIWANGG RIGGLVDRED
501: VPIPEEPERE DQEKFKNWRW ESKKAIKQNN ERHSQRCDIE LKLEVARKMK DEEGFYYPHN VDFRGRAYPI HPYLNHLGSD LCRGILEFCE GKPLGKSGLR
601: WLKIHIANLY AGGVDKLAYE DRIAFTESHL EDIFDSSDRP LEGKRWWLNA EDPFQCLAAC INLSEALRSP FPEAAISHIP IHQDGSCNGL QHYAALGRDK
701: LGADAVNLVT GEKPADVYTE IAARVLKIMQ QDAEEDPETF PNATYAKLML DQVDRKLVKQ TVMTSVYGVT YSGARDQIKK RLKERGTFED DSLTFHASCY
801: AAKITLKALE EMFEAARAIK SWFGDCAKII ASENNAVCWT TPLGLPVVQP YRKPGRHLVK TTLQVLTLSR ETDKVMARRQ MTAFAPNFIH SLDGSHMMMT
901: AVACNRAGLS FAGVHDSFWT HACDVDVMNT ILREKFVELY EKPILENLLE SFQKSFPDIS FPPLPERGDF DLRKVLESTY FFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.